genome.fa.s1305.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001305.1 Hibiscus syriacus cultivar Beakdansim tig00002545_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60672

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6030--6060	13	2.4	13	100	0	62	51	0	0	48	1.00
8253--8296	23	1.9	23	90	0	70	54	2	4	38	1.33
10878--10906	15	1.9	15	100	0	58	20	20	24	34	1.97
14175--14270	39	2.5	39	82	1	122	39	12	8	39	1.73
14218--14437	94	2.3	96	81	5	259	41	11	8	38	1.72
14405--14540	39	3.5	37	75	10	123	41	14	8	35	1.76
14565--14652	39	2.2	40	83	4	115	46	10	5	37	1.62
14866--15053	58	3.2	58	86	5	238	41	14	9	34	1.78
15221--15353	45	3.0	45	83	2	142	41	13	9	35	1.78
15466--15517	19	2.7	19	96	0	95	51	0	0	48	1.00
17182--17304	38	3.2	38	63	17	99	52	8	4	34	1.52
17150--17304	78	2.0	78	94	1	274	52	8	6	32	1.57
29875--30189	82	3.8	82	88	0	416	33	23	11	31	1.90
29891--30214	41	7.9	41	76	4	323	33	23	10	32	1.89
31561--31600	21	1.9	21	100	0	80	32	30	22	15	1.94
31608--31643	18	2.0	18	100	0	72	27	33	22	16	1.95
31561--31687	46	2.7	46	90	3	182	35	29	17	17	1.93
32501--32558	20	2.7	20	86	10	71	22	22	22	32	1.98
38775--38832	29	2.0	29	86	0	80	48	0	1	50	1.11
38882--38919	17	2.2	18	85	4	51	65	2	0	31	1.06
40533--40669	3	45.7	3	81	12	149	68	0	1	29	0.98
41095--41998	113	8.0	113	90	2	1336	28	19	14	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41053--41989	226	4.1	226	92	1	1488	28	19	14	36	1.92
40872--41996	339	3.3	338	85	6	1448	28	19	15	37	1.92
42398--42452	22	2.5	22	87	0	83	36	14	14	34	1.87
45046--45267	114	1.9	114	90	0	354	31	21	14	31	1.94
46872--46911	17	2.4	17	82	0	53	5	20	0	75	0.99
53783--54284	163	3.1	163	84	3	602	28	14	12	44	1.82
56044--56115	34	2.1	34	87	5	101	68	0	5	26	1.12

Tables:   1

The End!