genome.fa.s1306.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001306.1 Hibiscus syriacus cultivar Beakdansim tig00002547_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65608

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3270--3661	217	1.8	217	90	0	631	29	18	19	33	1.95
4897--4935	16	2.4	16	100	0	78	66	5	28	0	1.12
6285--6648	131	2.8	130	76	7	308	32	9	16	41	1.80
8057--8134	2	39.0	2	100	0	156	50	0	0	50	1.00
14747--14790	23	1.9	24	82	17	58	61	11	9	18	1.55
16381--16435	24	2.3	24	83	0	74	30	16	25	27	1.96
23505--23563	31	1.9	31	89	6	93	45	13	16	23	1.83
25825--25857	15	2.2	15	100	0	66	27	33	24	15	1.95
26102--26144	20	2.2	19	84	12	52	41	18	0	39	1.51
32668--32699	14	2.2	15	94	5	57	28	31	25	15	1.96
34232--34293	31	2.0	31	90	0	97	35	14	25	24	1.93
38751--38785	2	17.5	2	100	0	70	51	0	0	48	1.00
39347--39398	17	2.8	18	80	13	61	38	1	0	59	1.08
39587--39640	17	3.0	18	81	13	58	24	3	1	70	1.13
39700--39744	19	2.4	19	82	13	58	17	8	0	73	1.08
40917--40953	19	1.9	19	89	10	58	8	24	0	67	1.17
45011--45065	22	2.5	22	93	0	92	40	25	10	23	1.87
45255--45314	24	2.6	22	76	10	57	30	13	6	50	1.67
45994--47827	106	17.3	106	90	0	2621	34	24	17	23	1.96
48577--48681	37	2.8	37	85	0	138	40	15	13	31	1.85
49392--49441	8	5.9	9	81	6	52	22	2	0	76	0.89
49360--49455	47	2.0	47	80	7	106	25	4	1	69	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49534--49577	19	2.4	19	82	14	56	18	9	0	72	1.10
51119--51209	46	2.0	46	95	0	164	40	19	4	35	1.72
51165--51332	74	2.3	74	92	0	291	36	22	11	29	1.90
55985--56020	16	2.2	16	95	0	63	38	0	5	55	1.23
55863--56168	166	1.9	164	94	1	540	39	5	10	43	1.63
63351--63510	85	1.9	84	89	1	248	27	16	20	35	1.95

Tables:   1

The End!