Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001307.1 Hibiscus syriacus cultivar Beakdansim tig00002548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 59716
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34
Found at i:2831 original size:51 final size:51
Alignment explanation
Indices: 2755--2855 Score: 193
Period size: 51 Copynumber: 2.0 Consensus size: 51
2745 TGGTCCTCAA
2755 TAGTTACATATTCTATCAATTTAGTTTTAGTTTTAACTCAATTCAAAAAAG
1 TAGTTACATATTCTATCAATTTAGTTTTAGTTTTAACTCAATTCAAAAAAG
*
2806 TAGTTATATATTCTATCAATTTAGTTTTAGTTTTAACTCAATTCAAAAAA
1 TAGTTACATATTCTATCAATTTAGTTTTAGTTTTAACTCAATTCAAAAAA
2856 TTAAGAGTAG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.45
Consensus pattern (51 bp):
TAGTTACATATTCTATCAATTTAGTTTTAGTTTTAACTCAATTCAAAAAAG
Found at i:7716 original size:21 final size:21
Alignment explanation
Indices: 7660--7719 Score: 84
Period size: 23 Copynumber: 2.7 Consensus size: 21
7650 GTAGTCCTAC
7660 GGGATAATCCTATGTGGTCATTT
1 GGGATAAT--TATGTGGTCATTT
7683 GGGATAAAATTATGTGGTCATTT
1 GGGAT--AATTATGTGGTCATTT
7706 GGGATAATTATGTG
1 GGGATAATTATGTG
7720 ACACTTCGGT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
21 9 0.26
23 23 0.66
25 3 0.09
ACGTcount: A:0.27, C:0.07, G:0.28, T:0.38
Consensus pattern (21 bp):
GGGATAATTATGTGGTCATTT
Found at i:12876 original size:20 final size:20
Alignment explanation
Indices: 12853--12891 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
12843 TAAATAATAT
* *
12853 CGATATTGTATGAATAGTAC
1 CGATACTGTATGAACAGTAC
*
12873 CGATACTGTGTGAACAGTA
1 CGATACTGTATGAACAGTA
12892 ATGAACAGTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (20 bp):
CGATACTGTATGAACAGTAC
Found at i:15652 original size:20 final size:20
Alignment explanation
Indices: 15605--15674 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
15595 AAAAATGTTT
*
15605 TATGAATAGTACTG-TATTG
1 TATGAATAGTACTGATACTG
*
15624 TATAAATAGTACTGATACTG
1 TATGAATAGTACTGATACTG
* * *
15644 TATGTATAGTACCGATATTG
1 TATGAATAGTACTGATACTG
* *
15664 TGTGAACAGTA
1 TATGAATAGTA
15675 TCGTTGCTAA
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
19 13 0.32
20 28 0.68
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (20 bp):
TATGAATAGTACTGATACTG
Found at i:15863 original size:20 final size:20
Alignment explanation
Indices: 15835--15883 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
15825 CAGAAAATGA
* *
15835 ATCCTCAACGGCTCCAAAAT
1 ATCCCCAACGGCTCCAAAAC
*
15855 ATCCCCAACGGCTCTAAAAC
1 ATCCCCAACGGCTCCAAAAC
*
15875 ATCACCAAC
1 ATCCCCAAC
15884 AACTATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.37, C:0.39, G:0.08, T:0.16
Consensus pattern (20 bp):
ATCCCCAACGGCTCCAAAAC
Found at i:16875 original size:15 final size:15
Alignment explanation
Indices: 16855--16900 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
16845 TATTTGATAA
16855 TGCTATGTG-ATAATG
1 TGCTATGTGAAT-ATG
16870 TGCTATGTGAATATG
1 TGCTATGTGAATATG
*
16885 TGCTAAGTGAATATG
1 TGCTATGTGAATATG
16900 T
1 T
16901 TATATGGAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 27 0.93
16 2 0.07
ACGTcount: A:0.28, C:0.07, G:0.26, T:0.39
Consensus pattern (15 bp):
TGCTATGTGAATATG
Found at i:17160 original size:23 final size:23
Alignment explanation
Indices: 17134--17177 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
17124 TAGGATAAAA
**
17134 TTATGTAGTCCTTCGGGACAAAC
1 TTATGTAGTAATTCGGGACAAAC
*
17157 TTATGTGGTAATTCGGGACAA
1 TTATGTAGTAATTCGGGACAA
17178 TTATATGGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (23 bp):
TTATGTAGTAATTCGGGACAAAC
Found at i:18852 original size:69 final size:69
Alignment explanation
Indices: 18588--18855 Score: 250
Period size: 69 Copynumber: 3.9 Consensus size: 69
18578 CTACATCCAC
* * * * * * * *
18588 ATCTATTTCATCCTCACGACTTCCACTATTATCTCTACCAGCACCCTCTTCCGTTCCATCTCTAT
1 ATCTATTTCACCCTCACGACTTCCACCATCATCTCTACCAGCACCCACCTCCGTTTCATCTCCAC
18653 TTCA
66 TTCA
* * * * * * * *
18657 ATCTATTTCACCCTTATGAATTCCATCATAATCTCTACTAGCACCCATCTCCGTTTTATCTCCAC
1 ATCTATTTCACCCTCACGACTTCCACCATCATCTCTACCAGCACCCACCTCCGTTTCATCTCCAC
18722 TTCA
66 TTCA
* * **** * * *
18726 ATTTATTTCACCCTTAC-ACCTTTTGTCATCATATCTACCAACACCCACATCCGTTTCATCTCCA
1 ATCTATTTCACCCTCACGA-CTTCCACCATCATCTCTACCAGCACCCACCTCCGTTTCATCTCCA
18790 CTTCA
65 CTTCA
* * * * *
18795 ATCTATTTCACCCTCACGACTTTCACCACCATCTCTACCAGCATCCACCTTCATTTCATCT
1 ATCTATTTCACCCTCACGACTTCCACCATCATCTCTACCAGCACCCACCTCCGTTTCATCT
18856 TCTCGTTTGG
Statistics
Matches: 157, Mismatches: 40, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
68 1 0.01
69 155 0.99
70 1 0.01
ACGTcount: A:0.23, C:0.37, G:0.04, T:0.36
Consensus pattern (69 bp):
ATCTATTTCACCCTCACGACTTCCACCATCATCTCTACCAGCACCCACCTCCGTTTCATCTCCAC
TTCA
Found at i:20513 original size:65 final size:63
Alignment explanation
Indices: 20340--20517 Score: 184
Period size: 65 Copynumber: 2.8 Consensus size: 63
20330 TGCATACCCG
* *
20340 GTGCATCGGTGCATCAA-GTGTCATCGATGCATGAAATGCATTCGATG-TTTCATAATAGCCAGA
1 GTGCATCGATGCAT-AATGTG-CATCGATGCATGAAATGCATTCGATGTTTTCATAATAACCAGA
** * * * *
20403 GTGCATCGATGCATGGCTGTTGCATCGATTCATCAAAT-TATTTCGATGTTTTCATAA-AACTCT
1 GTGCATCGATGCAT-AATG-TGCATCGATGCATGAAATGCA-TTCGATGTTTTCATAATAAC-CA
20466 GA
62 GA
20468 GTGCATCGATGCATAATATGTGCATCGATGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCAT-A-ATGTGCATCGATGCATGAAATGCATTCGATGTT
20518 CAATTTATTT
Statistics
Matches: 93, Mismatches: 15, Indels: 12
0.77 0.12 0.10
Matches are distributed among these distances:
63 14 0.15
64 24 0.26
65 52 0.56
66 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33
Consensus pattern (63 bp):
GTGCATCGATGCATAATGTGCATCGATGCATGAAATGCATTCGATGTTTTCATAATAACCAGA
Found at i:21014 original size:2 final size:2
Alignment explanation
Indices: 21007--21043 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
20997 AACATAGCCA
21007 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21044 GCTTAAGCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:21649 original size:21 final size:21
Alignment explanation
Indices: 21625--21668 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
21615 GTGCCGGAGG
*
21625 AGGAGGAGCACGAGAAGAGCT
1 AGGAGGAGCACGAGAAGAACT
* * *
21646 AGGAGTAGCTCGTGAAGAACT
1 AGGAGGAGCACGAGAAGAACT
21667 AG
1 AG
21669 CTCCCGGTGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.39, T:0.11
Consensus pattern (21 bp):
AGGAGGAGCACGAGAAGAACT
Found at i:29587 original size:22 final size:23
Alignment explanation
Indices: 29559--29612 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
29549 ATCTTTTATG
29559 ATTTTTAGGAATTACCT-TTGCA
1 ATTTTTAGGAATTACCTCTTGCA
* * **
29581 ATTTTTAAGAATTATCTCTTGGG
1 ATTTTTAGGAATTACCTCTTGCA
29604 ATTTTTAGG
1 ATTTTTAGG
29613 GTTTTTGAGG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.48
Consensus pattern (23 bp):
ATTTTTAGGAATTACCTCTTGCA
Found at i:29733 original size:21 final size:21
Alignment explanation
Indices: 29709--29763 Score: 87
Period size: 19 Copynumber: 2.7 Consensus size: 21
29699 TTTTACAAAA
29709 GTTTTTACTTTTTTCTCTTTC
1 GTTTTTACTTTTTTCTCTTTC
29730 GTTTTTAC--TTTTCTCTTTC
1 GTTTTTACTTTTTTCTCTTTC
29749 GTTTTTACTTATTTT
1 GTTTTTACTT-TTTT
29764 TCATTTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 19 0.61
21 8 0.26
22 4 0.13
ACGTcount: A:0.07, C:0.16, G:0.05, T:0.71
Consensus pattern (21 bp):
GTTTTTACTTTTTTCTCTTTC
Found at i:30377 original size:16 final size:16
Alignment explanation
Indices: 30352--30385 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
30342 AGAATTTTAA
30352 TTCAACTTTACTTTCT
1 TTCAACTTTACTTTCT
* *
30368 TTCAATTTTATTTTCT
1 TTCAACTTTACTTTCT
30384 TT
1 TT
30386 AGTTTCAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.65
Consensus pattern (16 bp):
TTCAACTTTACTTTCT
Found at i:35012 original size:13 final size:13
Alignment explanation
Indices: 34996--35020 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34986 TAATTATAAA
34996 ATAAAAATTTTAG
1 ATAAAAATTTTAG
35009 ATAAAAATTTTA
1 ATAAAAATTTTA
35021 ATTAATTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
ATAAAAATTTTAG
Found at i:35241 original size:183 final size:184
Alignment explanation
Indices: 34926--35312 Score: 631
Period size: 183 Copynumber: 2.1 Consensus size: 184
34916 TTTTCTAATT
* * *
34926 TATATAA-AAATTAAATATTTTTTAATTCAAAAAAAGTTTATAATTAATTTAAATAATATATAAT
1 TATATAATATATTTAATATTTTTTAATTCAAAAAAAGTTTACAATTAATTTAAATAATATATAAT
*
34990 TATAAAATAAAAATTTTAGATAAAAATTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
66 TATAAAATAAAAAATTTAGATAAAAATTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
* *
35055 GGATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGGCTT-AGCCCATATTTTA
131 GGATCTTAAATTATTAATTGGGTTTTAAATGATTTGGG-TTAAGCCCATATGTTA
35109 TATATAATATATTTAATATTTTTTAATT-AGAAAACAA-TTTACAATTAATTTAAATAATATATA
1 TATATAATATATTTAATATTTTTTAATTCA-AAAA-AAGTTTACAATTAATTTAAATAATATATA
* **
35172 ATTATAAAATAAAAAATTTATAT-AATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTA
64 ATTATAAAATAAAAAATTTAGATAAAAATTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTA
35236 TTGGATCTTAAATTATTAATTGGGTTTTAAATGATTTGGGTTAAGCCCATATGTTA
129 TTGGATCTTAAATTATTAATTGGGTTTTAAATGATTTGGGTTAAGCCCATATGTTA
35292 TATATAATATATTTAATATTT
1 TATATAATATATTTAATATTT
35313 AAAATTTAAT
Statistics
Matches: 191, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
182 2 0.01
183 119 0.62
184 68 0.36
185 2 0.01
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.46
Consensus pattern (184 bp):
TATATAATATATTTAATATTTTTTAATTCAAAAAAAGTTTACAATTAATTTAAATAATATATAAT
TATAAAATAAAAAATTTAGATAAAAATTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
GGATCTTAAATTATTAATTGGGTTTTAAATGATTTGGGTTAAGCCCATATGTTA
Found at i:35337 original size:9 final size:9
Alignment explanation
Indices: 35318--35351 Score: 59
Period size: 9 Copynumber: 3.7 Consensus size: 9
35308 TATTTAAAAT
35318 TTAATTTCGG
1 TTAA-TTCGG
35328 TTAATTCGG
1 TTAATTCGG
35337 TTAATTCGG
1 TTAATTCGG
35346 TTAATT
1 TTAATT
35352 AACCGAATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 20 0.83
10 4 0.17
ACGTcount: A:0.24, C:0.09, G:0.18, T:0.50
Consensus pattern (9 bp):
TTAATTCGG
Found at i:36117 original size:2 final size:2
Alignment explanation
Indices: 36110--36137 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
36100 AAAAATAAAG
36110 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36138 TCCTTTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36558 original size:42 final size:42
Alignment explanation
Indices: 36473--36559 Score: 111
Period size: 42 Copynumber: 2.1 Consensus size: 42
36463 AAATTCCGTA
* * ***
36473 TTTGTTTTATGTAATTCGTTTTTCGAAAAATATTTTTTTGTG
1 TTTGTTTCACGTAATTCGTTTTTCGAAAAATATTTTCCAGTG
* *
36515 TTTGTTTCACGTAATTCGTTTTTTGGAAAATATTTTCCAGTG
1 TTTGTTTCACGTAATTCGTTTTTCGAAAAATATTTTCCAGTG
36557 TTT
1 TTT
36560 AGTTAGAGGA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.21, C:0.08, G:0.15, T:0.56
Consensus pattern (42 bp):
TTTGTTTCACGTAATTCGTTTTTCGAAAAATATTTTCCAGTG
Found at i:38276 original size:14 final size:14
Alignment explanation
Indices: 38257--38303 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
38247 ATAGAAATAT
38257 AATTCATTTTTCAG
1 AATTCATTTTTCAG
*
38271 AATTCAATTTTCAG
1 AATTCATTTTTCAG
* *
38285 TAATTTATTTTTCAA
1 -AATTCATTTTTCAG
38300 AATT
1 AATT
38304 TAATTTTTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 17 0.61
15 11 0.39
ACGTcount: A:0.34, C:0.11, G:0.04, T:0.51
Consensus pattern (14 bp):
AATTCATTTTTCAG
Found at i:38296 original size:15 final size:15
Alignment explanation
Indices: 38256--38298 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
38246 TATAGAAATA
38256 TAATTCATTTTTCAG
1 TAATTCATTTTTCAG
*
38271 -AATTCAATTTTCAG
1 TAATTCATTTTTCAG
*
38285 TAATTTATTTTTCA
1 TAATTCATTTTTCA
38299 AAATTTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.30, C:0.12, G:0.05, T:0.53
Consensus pattern (15 bp):
TAATTCATTTTTCAG
Found at i:38309 original size:15 final size:15
Alignment explanation
Indices: 38262--38311 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
38252 AATATAATTC
* *
38262 ATTTTTCAGAATTCA
1 ATTTTTCAAAATTTA
*
38277 A-TTTTCAGTAATTT-
1 ATTTTTCA-AAATTTA
38291 ATTTTTCAAAATTTA
1 ATTTTTCAAAATTTA
38306 ATTTTT
1 ATTTTT
38312 AGAAAATCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 12 0.41
15 17 0.59
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (15 bp):
ATTTTTCAAAATTTA
Found at i:41488 original size:2 final size:2
Alignment explanation
Indices: 41483--41519 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
41473 TTCCAATTCC
41483 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
41520 GAAAATTATC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:48915 original size:6 final size:6
Alignment explanation
Indices: 48906--48930 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
48896 AAGTGGCTTT
48906 GGCTCA GGCTCA GGCTCA GGCTCA G
1 GGCTCA GGCTCA GGCTCA GGCTCA G
48931 TTCATTTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.36, T:0.16
Consensus pattern (6 bp):
GGCTCA
Found at i:55134 original size:15 final size:15
Alignment explanation
Indices: 55116--55147 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
55106 CAAATGTATA
*
55116 AACCGCAAATGCCTC
1 AACCCCAAATGCCTC
55131 AACCCCAAATGCCTC
1 AACCCCAAATGCCTC
55146 AA
1 AA
55148 TATCATCGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.41, G:0.09, T:0.12
Consensus pattern (15 bp):
AACCCCAAATGCCTC
Found at i:56361 original size:217 final size:218
Alignment explanation
Indices: 55951--56387 Score: 619
Period size: 217 Copynumber: 2.0 Consensus size: 218
55941 ATTGCACAAG
* *
55951 ATGGTGACAGAAAAATTTTCCCTATTGCCTTTTCCATTGTTAAAAATGATTTATAGGAAACATGA
1 ATGGTGACAGAAAAATTTTCCCTATTGCCTTTTCCATTGTTAAAAATGAGTTAGAGGAAACATGA
56016 AATTTCTTTCTCTCCAACTTGCATTCCTATGTTGTAACTAAAAATGGGATTTGTATGATATCAAA
66 AATTTCTTTCTCTCCAACTTGCATTCCTATGTTGTAACTAAAAATGGGATTTGTATGATATCAAA
*
56081 CTGTTTACCTTGGTTGTTAGCCACGATTGATAGACCGGGAAGTAGATGGTCGCCTCCTCACGCAT
131 CTGTTTACCTTGGTTGTTAGCCACAATTGATAGACCGGGAAGTAGATGGTCGCCTCCTCACGCAT
56146 ATCAGACATATTGTATACATCAT
196 ATCAGACATATTGTATACATCAT
* * * * *
56169 ATGGTGACAGAAACATTTTTCCTATTG-TTTTTCCATTGTTAAAAATGAGTTAGAGGAAACGTGG
1 ATGGTGACAGAAAAATTTTCCCTATTGCCTTTTCCATTGTTAAAAATGAGTTAGAGGAAACATGA
* * * ** *** * *
56233 AGTTTCTTTTTCTCCAATTTGTGTTCCTATGTTGTTGTTCAAGATTGGG-TTTGTATGATATCAA
66 AATTTCTTTCTCTCCAACTTGCATTCCTATGTTGTAACT-AAAAATGGGATTTGTATGATATCAA
* * *
56297 ACTGTTTACC-TGTGTTGTTAGCCACAATTGATAGACTGGGAAGTAGGTGGTCGCCTCTTCACGC
130 ACTGTTTACCTTG-GTTGTTAGCCACAATTGATAGACCGGGAAGTAGATGGTCGCCTCCTCACGC
* * *
56361 ATATCTGGCGTATTGTATACATCAT
194 ATATCAGACATATTGTATACATCAT
56386 AT
1 AT
56388 TGCTTCCAAT
Statistics
Matches: 193, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
216 2 0.01
217 159 0.82
218 32 0.17
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (218 bp):
ATGGTGACAGAAAAATTTTCCCTATTGCCTTTTCCATTGTTAAAAATGAGTTAGAGGAAACATGA
AATTTCTTTCTCTCCAACTTGCATTCCTATGTTGTAACTAAAAATGGGATTTGTATGATATCAAA
CTGTTTACCTTGGTTGTTAGCCACAATTGATAGACCGGGAAGTAGATGGTCGCCTCCTCACGCAT
ATCAGACATATTGTATACATCAT
Done.