Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000131.1 Hibiscus syriacus cultivar Beakdansim tig00000237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100514

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4120--4153
2
17.5
2
93
6
61
47
0
0
52
1.00
8629--8687
2
29.5
2
100
0
118
50
0
0
49
1.00
9012--9062
24
2.1
24
89
7
77
41
13
29
15
1.86
13602--13655
17
3.0
18
83
8
74
66
16
0
16
1.25
13614--13694
26
3.1
26
80
8
85
71
12
0
16
1.14
15949--15985
20
1.9
18
89
10
56
62
0
5
32
1.18
18439--18467
7
4.1
7
100
0
58
0
86
13
0
0.58
23533--23558
1
26.0
1
100
0
52
100
0
0
0
0.00
24199--24278
42
1.9
42
84
5
108
36
20
18
25
1.95
23854--24678
257
3.2
256
89
3
1156
34
15
16
34
1.90
34250--34374
31
4.0
31
76
9
128
32
19
18
30
1.95
38580--38703
31
3.9
32
75
16
98
33
17
18
30
1.94
41068--41132
3
22.0
3
80
9
71
70
1
0
27
0.96
41128--41167
7
5.7
7
100
0
80
45
0
12
42
1.42
43445--43555
54
2.1
54
98
0
213
28
5
11
54
1.59
43806--43841
15
2.5
14
86
8
54
36
13
8
41
1.75
46940--46968
15
2.0
15
93
6
51
68
0
10
20
1.18
74679--74731
21
2.5
21
93
0
88
28
30
22
18
1.98
74740--75040
21
14.6
21
69
12
185
21
18
24
35
1.95
74740--75065
42
7.9
40
88
2
418
21
18
23
36
1.95
74765--75065
82
3.7
82
90
1
471
21
18
23
36
1.95
74907--75061
21
7.5
21
70
20
112
21
18
21
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77867--78020
65
2.4
65
89
5
224
29
23
18
29
1.97
77867--78039
64
2.7
63
84
7
206
28
24
18
28
1.98
79735--79792
3
19.3
3
89
0
89
60
0
5
34
1.19
80030--80086
28
2.1
27
83
9
71
26
1
8
63
1.34
85125--85173
17
2.8
18
84
9
66
34
0
2
63
1.06
85166--85269
32
3.2
32
69
15
97
42
0
0
56
1.05
85127--85294
64
2.7
65
87
7
242
41
0
1
57
1.09
86458--86512
12
4.6
12
76
0
56
16
16
43
23
1.87
86510--86553
2
22.5
2
81
4
54
54
0
0
45
0.99
86514--86611
33
3.0
34
79
7
107
47
0
0
52
1.00
89678--89804
35
3.6
35
75
9
114
33
16
19
30
1.94
91565--91607
20
2.2
20
91
0
68
20
16
27
34
1.94
92287--92327
3
14.0
3
85
14
59
31
0
0
68
0.90
93428--93709
141
2.0
141
94
0
492
23
11
12
52
1.70
94328--94352
12
2.1
12
100
0
50
28
16
16
40
1.89

Tables:   1

The End!