Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001311.1 Hibiscus syriacus cultivar Beakdansim tig00002556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100895

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12663--12705
22
2.0
21
82
8
52
32
6
9
51
1.61
16572--16610
18
2.2
18
95
0
69
58
0
12
28
1.34
16572--16614
17
2.5
17
85
10
61
55
0
11
32
1.36
19157--19192
6
6.2
6
96
3
65
66
13
0
19
1.24
20358--20394
2
18.5
2
100
0
74
48
0
0
51
1.00
23654--23696
2
21.5
2
100
0
86
48
0
0
51
1.00
37343--37389
23
2.0
23
87
0
67
14
25
10
48
1.76
38259--38368
29
3.8
29
95
2
195
17
20
16
45
1.85
38934--38977
21
2.1
21
100
0
88
34
18
18
29
1.94
45163--45277
29
4.0
29
88
2
160
18
20
14
46
1.83
45654--45810
64
2.5
63
77
10
158
26
19
19
35
1.95
47093--47149
26
2.2
26
84
12
73
64
0
0
35
0.93
48041--48090
22
2.3
22
96
3
93
40
20
8
32
1.81
48831--48933
36
2.9
36
94
0
179
42
15
15
26
1.87
51689--51740
22
2.4
22
90
3
79
69
3
0
26
1.06
54448--54485
13
3.0
13
88
3
51
68
2
5
23
1.23
55825--55871
3
15.0
3
82
8
58
61
0
0
38
0.96
56346--57019
113
6.0
113
96
0
1208
27
17
15
39
1.90
57420--57475
23
2.5
22
80
5
67
35
12
14
37
1.84
58769--58939
76
2.3
76
84
1
218
32
23
14
30
1.94
60044--60384
114
3.0
114
93
3
578
30
20
15
33
1.94
62945--62977
2
16.5
2
100
0
66
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65931--65969
15
2.7
15
88
4
53
51
12
15
20
1.76
65931--65978
14
3.4
14
85
2
51
52
10
14
22
1.72
68423--68455
15
2.3
15
89
5
50
57
0
0
42
0.98
69785--69849
3
21.0
3
84
6
67
58
0
0
41
0.98
69809--69861
24
2.2
24
86
6
72
60
0
0
39
0.97
70953--71017
30
2.2
30
91
0
103
32
6
15
46
1.70
70961--71024
30
2.1
30
91
0
101
31
4
14
50
1.63
71010--71082
31
2.3
31
83
2
92
46
9
4
39
1.56
80381--80424
19
2.3
19
92
7
72
22
43
0
34
1.54
85559--85592
17
2.0
17
88
0
50
58
0
0
41
0.98
85585--85623
14
3.0
13
82
10
53
41
0
2
56
1.13
87175--87208
2
17.0
2
100
0
68
50
0
0
50
1.00
92470--92523
28
2.0
27
82
10
65
24
25
18
31
1.97

Tables:   1

The End!