genome.fa.s1314.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001314.1 Hibiscus syriacus cultivar Beakdansim tig00002561_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43557

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
731--755	2	12.5	2	100	0	50	52	0	0	48	1.00
3295--3348	29	2.0	26	89	10	81	37	3	5	53	1.42
3389--3419	15	2.1	15	93	0	53	41	3	0	54	1.16
3729--3831	2	52.0	2	98	1	199	49	0	0	50	1.00
5282--5320	19	2.1	18	85	9	51	41	7	15	35	1.76
7879--7918	19	2.1	19	86	9	55	47	0	15	37	1.45
9015--9156	72	2.0	72	92	0	239	26	20	17	35	1.95
11510--11615	55	1.9	55	86	3	151	39	14	16	29	1.88
12700--12961	116	2.3	116	90	1	400	28	19	22	29	1.98
12884--12939	21	2.7	21	72	8	60	32	25	21	21	1.98
12879--13695	45	18.5	45	87	3	1031	26	22	18	31	1.97
12926--13695	269	2.9	268	90	2	1164	26	22	17	32	1.97
12879--13695	224	3.7	220	85	3	1040	26	22	18	31	1.97
14259--14323	20	3.3	20	64	12	53	46	12	18	23	1.82
14623--14666	23	1.9	23	95	0	79	20	50	4	25	1.67
15603--15633	15	2.1	15	93	0	53	41	3	0	54	1.16
16247--16382	20	6.7	20	72	11	87	25	25	19	29	1.98
16980--17021	19	2.2	19	87	8	59	11	21	21	45	1.84
16978--17084	20	5.4	20	83	3	101	14	16	22	45	1.84
18810--18859	18	2.8	18	100	0	100	32	20	6	42	1.76
19007--19074	20	3.4	20	95	0	118	35	26	20	17	1.95
19117--19164	20	2.4	20	100	0	96	14	20	27	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19424--19490	20	3.5	18	78	11	71	19	17	25	37	1.94
21092--21216	31	4.0	31	94	0	214	39	24	17	18	1.92
22531--22585	3	18.3	3	92	0	92	61	0	34	3	1.13
25522--25615	31	3.0	31	95	3	163	38	24	19	18	1.93
26267--26428	64	2.5	64	80	4	175	30	18	17	33	1.94
27963--28187	64	3.5	64	83	4	267	33	20	19	27	1.96
28938--29160	103	2.2	103	99	0	437	25	13	24	36	1.91
29179--29234	23	2.4	23	90	0	85	19	28	25	26	1.99
31322--31380	20	3.0	20	97	0	109	49	22	20	8	1.75
31389--31525	34	3.9	34	76	14	141	23	20	21	35	1.96
31423--31639	20	11.5	19	75	13	166	24	18	23	33	1.97
31383--31639	40	6.9	39	72	18	181	24	19	22	34	1.96
31443--31545	54	1.9	54	89	0	161	25	19	21	33	1.97
31423--31639	94	2.3	94	87	3	294	24	18	23	33	1.97
31383--31681	74	4.0	74	79	5	309	25	18	21	34	1.96
31538--31681	54	2.7	54	90	0	216	25	15	23	35	1.94
31656--31916	135	1.9	138	94	3	465	42	15	13	28	1.84
31976--32010	18	1.9	18	94	0	61	17	2	25	54	1.57
34245--34298	24	2.2	24	93	0	90	40	20	18	20	1.91
35128--35227	20	5.0	20	95	0	164	27	20	26	27	1.99
35196--35257	20	3.1	20	90	4	90	25	20	16	37	1.93
35220--35263	20	2.2	20	91	0	70	27	15	13	43	1.85

Tables:   1

The End!