genome.fa.s1315.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001315.1 Hibiscus syriacus cultivar Beakdansim tig00002563_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79471

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284--316	17	1.9	17	100	0	66	87	12	0	0	0.53
937--991	22	2.5	22	93	0	92	40	25	10	23	1.87
1903--3672	104	17.1	105	87	5	2382	34	24	17	23	1.96
1903--3685	206	8.6	208	86	6	2216	34	24	17	23	1.96
4432--4536	37	2.8	37	85	0	138	40	15	13	31	1.85
5201--5257	19	2.9	19	80	10	53	24	3	0	71	1.01
5223--5278	25	2.2	26	84	9	71	19	1	0	78	0.84
5367--5442	24	3.2	24	66	17	59	19	9	2	68	1.29
6934--7024	46	2.0	46	95	0	164	40	19	4	35	1.72
6980--7147	74	2.3	74	92	0	291	36	22	11	29	1.90
11776--11812	16	2.3	16	95	0	65	40	0	5	54	1.24
11653--11957	162	1.9	162	94	1	540	39	5	10	43	1.64
19143--19305	85	1.9	85	91	0	263	26	16	20	35	1.94
21391--21472	43	1.9	43	90	5	130	21	21	18	37	1.94
27385--27453	13	5.6	12	77	22	56	17	49	17	15	1.80
27403--27482	31	2.5	31	87	4	106	16	45	20	18	1.86
27384--27443	18	3.3	18	100	0	120	16	50	18	15	1.79
27459--27490	7	4.4	7	92	7	55	12	34	28	25	1.92
27456--27499	15	2.8	15	93	6	70	13	34	29	22	1.93
29989--30083	24	4.0	24	85	0	127	18	13	17	49	1.79
29989--30081	12	7.8	12	75	9	82	18	13	18	49	1.80
29975--30083	48	2.3	48	87	3	148	18	15	17	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32207--32252	18	2.6	18	96	0	83	19	52	15	13	1.75
32265--32311	10	5.5	8	82	14	51	14	34	27	23	1.94
34811--34880	12	5.8	12	81	6	79	14	15	18	51	1.77
34774--34882	48	2.3	48	87	3	148	18	15	17	48	1.81
34774--34882	24	4.5	24	81	2	130	18	15	17	48	1.81
36201--36246	24	1.9	24	82	8	58	41	0	6	52	1.27
39687--39726	2	20.0	2	94	0	71	47	2	0	50	1.14
40313--40366	23	2.3	23	96	0	99	25	25	9	38	1.86
40336--40381	16	2.9	16	80	0	56	28	26	8	36	1.86
40327--40390	23	2.8	23	83	4	67	28	25	10	35	1.89
40798--40924	60	2.1	59	82	5	157	37	12	12	37	1.81
40955--41323	2	198.5	2	65	24	107	40	2	5	50	1.40
40961--41123	27	6.0	27	72	11	100	42	1	4	50	1.34
40954--41348	31	12.7	30	68	21	110	40	3	5	51	1.40
40954--41088	5	27.2	5	72	15	52	40	0	5	53	1.29
41150--41283	21	6.4	21	70	23	63	41	2	4	50	1.37
41208--41312	54	2.0	53	81	12	126	40	3	3	51	1.38
41262--41334	17	4.5	17	71	23	59	39	2	4	53	1.34
51409--51507	32	3.1	32	79	0	108	22	20	26	31	1.98
52093--52155	31	2.0	32	84	9	85	36	3	4	55	1.37
53215--53245	13	2.4	13	100	0	62	51	0	0	48	1.00
55380--55424	23	1.9	24	95	4	83	44	2	4	48	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58138--58166	15	1.9	15	100	0	58	20	20	24	34	1.97
61444--61539	39	2.5	39	82	1	122	39	12	8	39	1.73
61487--61706	94	2.3	96	81	5	259	41	11	8	38	1.72
61674--61809	39	3.5	37	75	10	123	41	14	8	35	1.76
61834--61921	39	2.2	40	83	4	115	46	10	5	37	1.62
62135--62322	58	3.2	58	86	5	238	41	14	9	34	1.78
62491--62623	45	3.0	45	83	2	142	41	13	9	35	1.78
62736--62787	19	2.7	19	96	0	95	51	0	0	48	1.00
64418--64567	76	2.0	76	94	1	264	52	8	6	32	1.58
77026--77336	41	7.6	41	76	7	274	33	23	11	31	1.91
77031--77335	82	3.8	81	87	2	389	33	23	11	30	1.91
78694--78733	21	1.9	21	100	0	80	32	30	22	15	1.94
78736--78779	17	2.4	18	88	11	72	34	29	18	18	1.94
78694--78813	45	2.6	45	86	7	161	35	29	17	17	1.93

Tables:   1

The End!