Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001316.1 Hibiscus syriacus cultivar Beakdansim tig00002567_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63924

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1743--1774
16
2.0
16
100
0
64
18
25
12
43
1.85
2120--2157
9
4.3
9
83
6
51
39
0
2
57
1.12
2115--2178
26
2.5
26
78
16
80
35
1
1
60
1.15
15029--15080
26
1.9
28
88
7
81
71
1
7
19
1.20
15055--15123
30
2.3
31
82
7
79
72
0
13
14
1.12
15029--15105
14
5.6
13
74
18
59
74
1
7
16
1.12
15467--15501
18
1.9
18
100
0
70
31
5
5
57
1.46
16673--17338
124
5.4
124
91
1
1009
41
15
17
25
1.89
17566--17654
3
30.0
3
70
6
65
37
1
2
59
1.17
17586--17655
36
1.9
36
82
5
88
37
2
2
57
1.29
17571--17618
18
2.7
18
90
0
78
39
0
2
58
1.10
32905--32975
30
2.4
29
81
4
81
40
35
2
21
1.68
37374--37402
13
2.3
13
94
5
51
68
0
17
13
1.20
37528--37569
22
1.9
22
90
0
66
42
0
28
28
1.56
40875--40923
16
2.9
16
84
6
53
61
0
22
16
1.34
41334--41362
13
2.3
13
94
5
51
68
0
17
13
1.20
44371--44405
17
2.0
18
88
5
54
62
5
0
31
1.18
44422--44461
20
2.0
20
85
0
53
37
0
32
30
1.58
44574--44636
32
2.0
32
100
0
126
34
26
25
12
1.92
45573--45623
3
16.7
3
83
4
66
31
0
1
66
1.03
45555--45624
15
5.1
14
74
22
60
30
0
1
68
0.98
45555--45623
31
2.1
33
84
7
88
30
0
1
68
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56260--56341
43
1.9
43
84
0
110
29
31
15
23
1.95
56303--56814
240
2.1
246
86
4
696
31
23
17
26
1.97
56678--56953
123
2.2
124
86
6
400
32
24
17
25
1.97
57170--57224
3
17.3
3
78
10
56
30
0
1
67
1.01
57170--57225
7
8.1
7
81
15
64
30
0
1
67
1.01
57173--57221
19
2.5
19
80
3
62
30
0
2
67
1.02
57579--57637
3
19.0
3
79
10
57
32
0
1
66
1.02
57589--57637
19
2.6
19
81
15
66
30
0
2
67
1.02
57579--57638
22
2.7
21
87
5
75
31
0
1
66
1.01
57168--58000
419
2.0
413
91
2
1366
31
21
14
32
1.93
62739--62829
34
2.6
34
81
11
103
27
5
0
67
1.13

Tables:   1

The End!