genome.fa.s1317.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001317.1 Hibiscus syriacus cultivar Beakdansim tig00002569_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86772

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4851--4915	12	5.4	12	75	14	62	58	18	9	13	1.61
4850--4955	24	4.4	24	73	9	90	51	17	11	18	1.75
6524--6560	18	2.1	18	85	14	51	32	13	10	43	1.79
7371--7651	81	3.5	81	72	9	308	44	22	5	27	1.75
7371--7679	156	2.0	157	97	0	584	43	23	7	26	1.79
11346--11382	18	2.1	18	85	14	51	32	13	10	43	1.79
12177--12216	17	2.4	17	86	0	53	30	32	25	12	1.92
13320--13515	55	3.6	55	87	1	268	25	21	18	34	1.96
16607--16642	2	18.0	2	100	0	72	50	0	0	50	1.00
22036--22083	23	2.1	23	84	0	60	35	10	18	35	1.85
22506--22568	23	2.7	23	92	0	99	38	20	4	36	1.74
22939--23001	23	2.7	23	92	0	99	38	20	4	36	1.74
22149--23211	433	2.5	433	97	1	1994	39	12	7	40	1.71
23417--23502	39	2.2	39	93	0	145	18	13	18	48	1.80
23758--23794	18	2.1	18	89	0	56	51	10	5	32	1.60
24216--24277	23	2.4	26	74	20	67	40	16	4	38	1.69
24225--24278	23	2.3	23	93	0	90	40	16	5	37	1.72
26737--27195	180	2.5	183	94	2	843	34	16	14	34	1.89
28677--28751	3	25.0	3	73	0	60	22	34	6	36	1.81
28681--28763	12	6.9	12	83	0	94	20	34	8	36	1.83
28685--28763	36	2.2	36	90	0	122	20	35	8	35	1.84
28705--28766	18	3.4	18	79	0	79	17	35	9	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28681--28766	6	14.3	6	77	0	64	19	34	8	37	1.82
30223--31896	198	8.5	198	98	0	3112	32	16	15	36	1.90
30223--31896	397	4.2	396	97	1	3112	32	16	15	36	1.90
32221--32290	34	2.1	32	89	5	104	21	31	15	31	1.95
32572--32613	21	2.0	21	90	0	66	26	26	21	26	1.99
32720--32763	22	2.0	22	90	0	70	13	31	34	20	1.92
32749--32778	15	2.0	15	100	0	60	13	26	33	26	1.93
32726--32805	21	4.0	21	75	20	82	13	28	36	21	1.92
32727--32799	37	2.0	37	89	2	112	15	28	34	21	1.94
32895--32954	29	2.0	31	90	6	97	41	18	6	33	1.76
34222--34269	19	2.5	20	82	3	62	29	12	6	52	1.63
35040--35107	34	2.0	33	88	2	100	22	29	16	32	1.95
35394--35435	21	2.0	21	90	0	66	26	26	21	26	1.99
35472--35535	21	3.0	21	100	0	128	14	28	43	14	1.83
35562--35605	22	2.0	22	90	0	70	13	31	34	20	1.92
35591--35620	15	2.0	15	100	0	60	13	26	33	26	1.93
35568--35647	21	4.0	21	75	20	82	13	28	36	21	1.92
35569--35641	37	2.0	37	89	2	112	15	28	34	21	1.94
35737--35796	29	2.0	31	90	6	97	41	18	6	33	1.76
35873--35921	19	2.6	19	93	0	80	57	10	2	30	1.43
37711--37776	33	2.0	33	90	0	105	22	48	0	28	1.51
37810--37874	21	3.1	21	80	6	69	15	29	15	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40235--40280	20	2.3	20	89	10	76	17	17	10	54	1.70
42723--42758	18	2.0	18	88	0	54	50	8	13	27	1.71
44880--44920	18	2.3	18	86	0	55	56	2	4	36	1.34
46633--46677	23	2.0	23	86	0	63	26	28	24	20	1.99
46656--46959	149	2.0	149	98	0	581	35	20	17	27	1.95
47495--47522	2	14.0	2	100	0	56	50	0	0	50	1.00
47844--47878	18	1.9	18	88	11	54	22	17	5	54	1.64
48466--48510	21	2.1	21	87	0	63	15	24	28	31	1.96
51642--51686	23	2.0	23	86	0	63	26	28	24	20	1.99
51665--51967	149	2.0	148	98	0	588	34	20	17	27	1.95
52838--52872	18	1.9	18	88	11	54	22	17	5	54	1.64
53461--53505	21	2.1	21	87	0	63	15	24	28	31	1.96
54614--54657	3	14.7	3	81	9	54	61	0	0	38	0.96
54602--54653	15	3.5	15	81	0	59	55	0	0	44	0.99
54611--54659	9	5.4	9	83	9	64	57	0	0	42	0.99
54783--54951	91	1.9	90	91	3	277	24	19	14	40	1.89
54870--55434	241	2.3	242	88	0	819	24	21	16	36	1.94
55228--55696	131	3.6	130	83	5	584	26	20	17	34	1.96
55943--56208	73	4.0	62	74	16	176	37	12	20	30	1.89
56003--56208	73	2.8	73	88	1	279	38	12	19	28	1.89
56093--56208	37	3.2	37	70	2	99	35	14	19	30	1.92
56214--57021	39	21.0	39	87	4	941	38	15	18	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56367--57130	117	6.6	116	85	4	512	39	15	16	27	1.90
64570--64600	9	3.4	9	95	0	53	48	0	3	48	1.17
65786--65973	32	5.9	32	78	12	181	20	25	26	28	1.99
65786--65973	31	5.9	31	83	7	191	20	25	26	28	1.99
65786--65973	63	3.0	63	85	1	232	20	25	26	28	1.99
67046--67086	20	2.1	20	90	4	66	63	2	4	29	1.28
73109--73206	19	4.7	21	67	20	62	52	1	2	44	1.19
80689--80739	23	2.3	22	86	6	68	41	0	0	58	0.98
80682--80740	22	2.6	23	81	13	68	42	0	0	57	0.98
81101--81153	21	2.5	21	84	0	70	20	22	18	37	1.94
81143--81273	20	6.6	20	78	3	147	38	19	21	19	1.93
81143--81273	40	3.3	40	86	3	174	38	19	21	19	1.93
81449--81511	22	2.9	21	81	11	74	23	38	14	23	1.92
81807--81831	12	2.1	12	100	0	50	32	16	20	32	1.94
81891--81940	20	2.5	20	90	0	73	18	18	28	36	1.94
81908--81962	20	2.8	20	91	0	83	10	16	23	49	1.77
81927--81970	20	2.2	20	87	0	61	13	13	20	52	1.74
83751--83902	20	8.4	20	77	17	138	40	19	19	19	1.91
83819--83940	40	3.2	40	78	11	132	39	19	21	19	1.93
83949--84015	20	3.3	20	89	0	89	25	17	20	35	1.95
85891--85924	14	2.4	14	85	0	50	32	0	20	47	1.51
86048--86101	14	3.5	14	73	22	54	44	20	24	11	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86061--86120	19	3.4	18	70	23	56	50	18	20	11	1.77
86039--86121	33	2.5	33	92	0	130	46	19	21	12	1.82
86204--86293	20	4.6	20	83	8	123	18	20	25	35	1.95
86204--86293	38	2.3	39	88	7	130	18	20	25	35	1.95

Tables:   1

The End!