genome.fa.s1318.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001318.1 Hibiscus syriacus cultivar Beakdansim tig00002570_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123157

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1154--1198	18	2.4	19	85	7	65	33	11	28	26	1.91
1755--1797	20	2.3	19	84	11	61	25	30	6	37	1.82
3420--3470	20	2.6	20	87	3	68	23	11	27	37	1.90
3736--3766	12	2.6	12	100	0	62	9	19	32	38	1.84
7609--7694	36	2.4	35	82	5	100	41	22	9	26	1.83
7935--8001	31	2.2	31	86	5	102	49	8	5	35	1.59
12288--12314	14	1.9	14	100	0	54	0	29	0	70	0.88
20548--20598	20	2.5	21	80	6	59	29	1	1	66	1.13
20589--20625	13	2.6	15	87	8	51	40	0	2	56	1.13
36503--36543	22	1.9	22	90	5	66	60	12	0	26	1.31
36685--36760	30	2.5	29	83	8	89	52	9	13	25	1.69
36707--36819	30	3.9	28	77	11	77	58	7	12	21	1.59
36727--36808	27	2.8	29	76	10	78	58	7	13	20	1.59
38473--38513	3	13.3	3	85	14	57	65	2	0	31	1.05
38480--38514	18	1.9	18	100	0	70	68	2	0	28	1.04
38706--39066	135	2.7	135	90	3	543	25	18	31	25	1.98
39079--39175	29	3.3	29	91	1	149	48	12	17	21	1.80
39213--39285	30	2.4	31	81	6	85	41	15	15	28	1.87
39228--39305	30	2.6	30	81	2	95	43	12	15	28	1.83
39350--39402	19	2.7	19	75	19	56	43	5	18	32	1.74
39536--39610	31	2.4	30	84	8	89	40	13	17	29	1.87
39562--39807	65	3.7	66	74	13	193	41	11	15	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39761--39819	31	1.9	31	96	3	111	42	16	13	27	1.86
40928--40992	24	2.8	24	75	15	64	52	4	10	32	1.57
41850--41904	17	3.2	16	78	19	58	1	12	9	76	1.10
41850--41904	16	3.2	17	82	14	69	1	12	9	76	1.10
42534--42588	28	2.0	26	86	6	74	43	12	14	29	1.82
45862--45928	30	2.2	30	89	0	98	53	8	11	25	1.66
45884--45969	30	3.0	28	77	13	77	56	8	12	22	1.62
47639--47673	18	1.9	18	94	0	61	68	5	0	25	1.11
50045--50116	28	2.5	28	97	2	135	52	1	0	45	1.09
54759--54792	12	3.0	11	87	8	50	32	0	0	67	0.91
54765--54790	6	4.3	6	100	0	52	30	0	0	69	0.89
54823--54877	10	5.6	10	78	8	51	81	12	5	0	0.84
54845--54884	9	4.4	9	83	0	53	75	15	10	0	1.05
54836--54877	18	2.3	18	95	0	75	80	11	7	0	0.88
59721--59762	21	2.0	20	86	4	57	40	7	14	38	1.73
68974--69017	21	2.1	21	86	0	61	15	25	27	31	1.96
72279--72317	20	2.0	20	100	0	78	33	10	15	41	1.81
72319--72360	21	2.0	20	86	4	57	40	7	14	38	1.73
80321--80384	36	1.9	32	81	15	76	28	4	10	56	1.54
80528--80709	93	2.0	93	93	0	310	39	18	14	27	1.89
84065--84100	14	2.6	14	100	0	72	27	0	22	50	1.50
86571--86597	12	2.2	12	100	0	54	22	44	0	33	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87712--87774	29	2.1	30	88	2	92	60	7	3	28	1.40
91348--91392	19	2.4	19	92	3	74	11	13	8	66	1.44
94639--95182	81	6.6	82	78	6	587	29	26	22	22	1.99
94639--95189	165	3.3	164	96	1	1030	29	25	22	22	1.99
95157--95222	33	2.0	33	100	0	132	30	18	27	24	1.98
101590--102201	128	4.8	128	95	0	1064	22	24	20	32	1.98
102602--102701	34	3.0	34	85	2	148	39	3	3	55	1.31
103221--103314	21	4.5	21	86	5	118	21	27	31	19	1.97
103318--103365	21	2.3	21	85	0	60	22	12	39	25	1.89
105094--105151	17	3.4	16	77	15	55	53	1	0	44	1.10
106752--106846	42	2.3	42	87	3	129	23	15	24	36	1.94
106752--106817	21	3.2	20	70	20	55	21	18	25	34	1.96
107226--107347	61	2.0	61	100	0	244	45	18	6	29	1.74
120316--120377	31	2.0	31	100	0	124	58	3	12	25	1.50

Tables:   1

The End!