genome.fa.s1319.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001319.1 Hibiscus syriacus cultivar Beakdansim tig00002572_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94254

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1977--2110	64	2.1	62	82	10	157	35	18	20	26	1.95
2662--2717	20	2.9	19	78	5	69	23	17	30	28	1.97
9448--9503	20	2.9	19	78	5	69	23	17	30	28	1.97
10992--11036	24	1.9	23	86	4	63	33	2	13	51	1.53
11002--11048	24	2.0	24	86	0	67	38	4	8	48	1.53
11868--12414	273	2.0	273	98	0	1058	24	18	19	37	1.93
13052--14056	199	5.0	199	90	2	1622	37	15	16	30	1.90
13052--14056	399	2.5	397	93	2	1721	37	15	16	30	1.90
15850--15889	22	1.9	21	85	10	55	27	15	10	47	1.77
16552--16603	23	2.3	23	79	0	68	34	13	7	44	1.72
16497--16771	136	2.0	136	86	3	383	35	10	10	43	1.74
16790--16841	16	3.2	16	88	2	77	34	21	1	42	1.64
19384--19536	76	2.0	76	91	2	245	37	12	18	30	1.88
21857--21894	20	1.9	20	94	0	67	26	23	18	31	1.97
21902--22062	64	2.5	64	83	7	186	23	25	18	32	1.97
23307--23346	20	2.0	20	85	0	53	15	20	0	65	1.28
25707--25844	64	2.2	63	84	7	172	23	23	19	33	1.97
37494--37533	21	1.9	21	89	0	62	47	0	5	47	1.24
37576--37666	32	2.9	32	83	1	94	43	2	4	49	1.34
40276--40342	34	1.9	34	82	14	84	22	13	17	46	1.83
43224--43253	2	15.0	2	92	0	51	46	0	0	53	1.00
46774--46846	33	2.2	33	82	2	85	21	16	23	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47469--47516	15	3.1	15	77	14	53	45	2	0	52	1.12
57186--57231	2	23.0	2	100	0	92	50	0	0	50	1.00
58352--58453	34	2.9	36	88	5	154	45	13	12	28	1.81
58842--58884	18	2.5	17	85	7	61	25	4	2	67	1.22
58938--58966	2	14.5	2	100	0	58	48	0	0	51	1.00
59314--59393	40	2.0	40	86	9	112	31	5	8	55	1.52
59430--59489	31	1.9	31	90	6	95	15	11	0	73	1.10
62484--62542	19	3.1	19	78	14	59	81	5	10	3	0.96
64168--64237	36	1.9	36	91	0	113	24	22	12	40	1.89
64253--64479	36	6.4	36	76	10	218	27	18	13	40	1.88
64253--64348	37	2.6	37	90	3	140	29	19	11	39	1.87
64172--64443	102	2.7	100	86	1	355	29	19	12	38	1.89
64273--64526	138	1.8	139	88	0	393	27	19	12	39	1.89
65246--65875	105	6.0	105	89	3	867	34	26	17	21	1.96
66423--66524	34	2.9	36	91	5	172	44	13	14	27	1.83
66913--66952	18	2.3	18	83	8	57	25	5	2	67	1.23
71303--71380	37	2.1	36	81	6	86	67	2	7	21	1.28
71333--71370	20	1.9	20	88	0	58	63	2	7	26	1.35
71860--71963	37	2.8	37	81	7	122	33	13	13	39	1.84
72657--74031	106	13.0	106	92	0	2164	23	18	24	33	1.97
72657--74031	529	2.6	528	92	0	2275	23	18	24	33	1.97
74040--74173	37	3.7	36	80	5	144	38	15	20	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74918--74994	22	3.5	22	87	0	109	23	10	23	42	1.84
75576--75623	19	2.6	18	83	6	60	2	12	6	79	1.01
75589--75632	18	2.4	18	88	7	63	0	13	6	79	0.92
78938--78992	8	7.2	8	76	15	55	63	1	0	34	1.05
78958--78997	19	2.0	22	85	14	59	67	2	0	30	1.04
79367--79470	36	2.8	36	80	2	118	31	14	13	40	1.85
81813--81952	64	2.2	64	84	5	176	27	17	21	33	1.96
85354--85388	15	2.3	15	100	0	70	14	22	34	28	1.93
92087--92131	14	3.3	15	74	25	55	13	24	37	24	1.91

Tables:   1

The End!