genome.fa.s132.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000132.1 Hibiscus syriacus cultivar Beakdansim tig00000238_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  187689

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2566--2594	2	14.5	2	100	0	58	48	0	0	51	1.00
2642--2687	24	2.0	22	83	12	56	23	6	4	65	1.35
2767--2798	7	4.4	7	96	4	55	43	0	0	56	0.99
2990--3066	40	2.0	40	85	10	106	29	5	7	57	1.49
3107--3131	9	2.8	9	100	0	50	20	0	0	80	0.72
3140--3183	18	2.4	18	80	0	52	13	13	2	70	1.26
5115--5283	84	2.0	83	84	8	220	17	11	7	63	1.48
6292--6332	18	2.3	18	86	0	55	14	43	9	31	1.78
10397--10504	35	3.2	33	93	5	182	37	0	1	61	1.07
16010--16049	17	2.4	17	86	0	53	32	12	15	40	1.84
21176--21292	42	2.8	42	80	0	153	24	16	22	36	1.94
21184--21292	21	5.2	21	76	0	101	25	16	21	36	1.94
22452--22513	31	2.0	31	90	0	97	40	12	9	37	1.77
25263--25449	94	2.0	95	97	1	358	38	11	15	34	1.84
30756--30789	16	2.1	16	94	0	59	26	8	20	44	1.81
34320--34373	21	2.6	21	81	0	72	20	12	20	46	1.83
34391--34448	21	2.8	21	89	0	89	24	25	20	29	1.99
35126--35197	21	3.4	21	88	0	99	30	22	25	22	1.99
35189--35242	21	2.6	21	84	0	72	27	20	22	29	1.98
36052--36248	21	9.6	20	78	10	175	31	21	22	23	1.98
36072--36248	41	4.3	41	75	17	170	32	20	22	23	1.98
36052--36229	83	2.1	83	82	10	204	31	22	23	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36068--36253	62	3.0	62	95	0	336	32	20	22	24	1.98
36859--36889	5	6.4	5	96	3	55	0	41	22	35	1.54
36863--36910	15	3.2	15	84	0	60	0	31	31	37	1.58
36890--36931	6	7.5	6	89	5	54	0	19	47	33	1.49
37020--37156	42	3.3	42	94	0	229	35	24	20	20	1.96
37017--37156	21	6.7	20	72	18	108	34	23	20	21	1.97
37792--37837	23	2.0	23	82	0	56	21	8	8	60	1.53
38563--38602	21	1.9	21	94	0	71	22	37	30	10	1.87
41497--41614	60	2.0	60	82	0	146	38	16	13	30	1.88
42905--42934	8	3.9	8	95	4	53	23	13	23	40	1.90
43123--43190	31	2.2	31	100	0	136	26	19	16	38	1.92
43766--43816	16	3.2	16	73	15	52	29	0	1	68	1.00
43765--43807	17	2.5	18	81	11	54	27	0	2	69	1.00
48234--48377	21	6.7	21	80	4	135	35	25	18	20	1.95
48234--48377	42	3.3	42	83	3	171	35	25	18	20	1.95
54236--54292	22	2.6	22	91	0	87	15	36	19	28	1.92
54955--55034	3	26.7	3	75	14	76	60	1	2	36	1.18
54955--55037	22	3.6	23	80	15	100	59	1	2	37	1.19
55167--55328	75	2.2	75	89	0	243	33	17	16	32	1.93
55294--55519	99	2.3	98	87	0	326	33	16	16	34	1.91
55486--55537	20	2.7	19	82	5	68	32	19	19	28	1.96
55868--55949	42	2.0	42	85	4	112	41	20	15	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57439--57780	51	6.5	51	81	4	371	24	21	16	37	1.94
57425--57766	103	3.3	102	88	4	479	23	20	16	38	1.93
65020--65102	3	27.7	3	74	13	73	59	1	3	36	1.23
65020--65105	22	4.0	21	81	12	97	58	1	3	37	1.23
67272--67323	19	2.7	19	100	0	104	21	19	17	42	1.89
70485--70713	54	4.2	54	84	2	280	27	16	20	34	1.95
70697--70808	58	1.9	59	87	1	163	34	11	19	33	1.88
71342--71420	2	39.5	2	100	0	158	50	0	0	49	1.00
72577--72660	30	2.8	30	81	0	96	30	28	21	19	1.97
72640--72759	31	3.8	31	76	6	107	31	20	17	30	1.96
72640--72759	63	1.9	62	85	8	163	31	20	17	30	1.96
92346--92709	132	2.8	132	86	0	503	16	26	17	40	1.90
92354--92705	66	5.3	66	70	12	247	16	25	17	40	1.90
92333--92738	132	3.1	131	80	6	435	16	25	17	40	1.89
93763--93796	18	1.9	18	88	5	52	26	29	26	17	1.98
93911--93977	29	2.3	29	86	0	98	44	20	7	26	1.78
95000--95222	106	2.1	106	97	0	428	34	24	4	36	1.76
95305--95473	60	2.8	60	79	8	177	37	7	22	32	1.83
99652--99751	51	2.0	51	95	0	182	26	17	22	35	1.95
105942--105993	2	26.0	2	96	0	95	48	0	1	50	1.12
111040--111109	26	2.7	26	97	0	131	40	11	21	27	1.87
122784--122827	17	2.6	17	88	0	70	15	25	27	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122874--122914	20	2.1	19	86	4	55	70	0	2	26	0.99
122933--123287	37	9.6	37	85	7	372	43	9	3	43	1.53
123257--123299	23	1.9	22	86	13	61	44	11	0	44	1.40
123549--123592	22	2.0	22	86	0	61	47	15	13	22	1.81
126429--126489	22	2.8	22	82	0	77	24	24	18	32	1.97
129472--129525	2	27.0	2	100	0	108	50	0	0	50	1.00
130921--130975	3	18.0	3	92	3	92	34	0	0	65	0.93
131097--131170	30	2.5	30	90	0	112	16	39	24	20	1.92
132446--132683	120	2.0	120	81	6	279	37	7	7	46	1.62
132550--132593	20	2.3	19	84	7	54	31	0	2	65	1.05
133185--133237	27	2.0	28	85	7	74	32	3	5	58	1.39
135286--135326	7	5.9	7	83	11	57	14	17	9	58	1.62
139516--139741	114	2.0	114	94	0	398	32	15	20	30	1.94
142186--142240	22	2.5	22	93	0	101	34	10	14	40	1.81
142755--143075	164	2.0	164	92	0	543	34	14	13	38	1.85
143079--143332	76	3.3	76	96	0	454	23	19	22	34	1.96
143483--143548	21	3.1	21	70	10	55	43	0	0	56	0.99
143522--143555	7	4.9	7	100	0	68	29	0	0	70	0.87
143522--143562	21	2.0	21	90	0	64	34	0	0	65	0.93
143678--143751	30	2.5	30	93	0	130	16	44	22	16	1.86
145132--145173	20	2.2	19	86	4	57	33	0	2	64	1.07
145030--145265	120	2.0	119	82	6	291	37	7	8	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145318--145347	7	4.3	7	95	0	51	30	3	0	66	1.07
150031--150112	3	27.3	3	100	0	164	32	0	0	67	0.91
152595--152621	2	13.5	2	100	0	54	51	0	0	48	1.00
152860--152884	2	12.5	2	100	0	50	48	0	0	52	1.00
153441--153502	25	2.5	24	71	5	61	50	3	1	45	1.27
160488--160530	18	2.4	18	96	0	77	20	23	30	25	1.99
172686--172750	31	2.1	32	85	2	87	24	4	23	47	1.70
173698--173753	16	3.4	16	85	9	76	26	30	7	35	1.83
179262--179319	30	2.0	29	89	3	89	29	3	10	56	1.49
184802--184838	19	1.9	19	88	0	56	56	18	2	21	1.54
185261--185317	29	1.9	30	82	10	73	52	14	14	19	1.74
186302--186326	4	6.2	4	100	0	50	52	24	0	24	1.48
186538--186606	23	3.0	23	80	0	84	33	24	26	15	1.95

Tables:   1

The End!