genome.fa.s1320.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001320.1 Hibiscus syriacus cultivar Beakdansim tig00002573_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147732

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59--138	20	4.0	20	90	0	133	43	20	17	18	1.88
187--254	20	3.5	20	93	2	111	25	20	22	32	1.98
786--890	21	5.0	21	74	3	95	20	37	19	22	1.95
783--893	42	2.6	42	78	5	118	20	37	18	22	1.94
2245--2280	14	2.6	14	90	0	54	30	0	22	47	1.52
2424--2584	20	8.7	20	70	14	78	16	21	21	40	1.91
2429--2504	33	2.3	34	95	2	136	13	23	19	43	1.86
2444--2524	33	2.4	33	87	2	108	14	23	20	40	1.90
2498--2584	40	2.2	40	87	4	122	19	19	24	36	1.95
5006--5065	24	2.5	24	83	0	84	38	18	18	25	1.93
5916--5968	20	2.7	20	87	0	70	20	18	22	37	1.94
5965--6010	21	2.2	21	88	0	65	36	17	28	17	1.92
9433--9467	18	1.9	18	94	0	61	22	5	0	71	1.07
18449--18634	33	5.6	33	81	5	214	29	22	16	32	1.95
18461--18634	66	2.6	65	88	1	240	28	21	17	32	1.96
26559--26643	6	14.2	6	94	0	134	30	49	15	4	1.65
32549--32614	6	11.2	6	90	3	89	30	48	15	6	1.69
32612--32675	5	12.8	5	91	0	65	17	34	40	7	1.78
36988--37169	36	5.1	36	87	2	204	23	25	20	31	1.98
36978--37169	72	2.7	73	84	1	235	22	25	20	31	1.98
37437--37512	20	4.1	20	74	22	83	22	35	26	15	1.94
37695--37734	20	1.9	21	85	10	55	37	35	10	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39874--39921	19	2.5	20	82	3	62	29	12	6	52	1.63
41237--41312	20	4.1	20	74	22	83	21	35	27	15	1.94
41425--41466	21	2.0	21	95	0	75	23	21	28	26	1.99
41495--41534	20	1.9	21	85	10	55	37	37	10	15	1.80
43675--43722	19	2.5	20	82	3	62	29	12	6	52	1.63
45041--45078	20	1.9	20	88	0	58	18	28	34	18	1.95
45228--45269	21	2.0	21	90	0	66	26	21	26	26	1.99
45298--45337	20	1.9	21	85	10	55	37	37	10	15	1.80
48173--48202	12	2.6	11	90	10	51	80	0	0	20	0.72
52205--52281	39	2.0	39	100	0	154	45	15	7	31	1.75
52274--52443	80	2.1	80	91	3	270	35	15	8	40	1.78
52298--52427	26	4.9	26	69	11	84	35	16	9	39	1.80
52358--52735	160	2.3	166	85	4	507	40	14	7	37	1.75
52539--52589	26	1.9	27	88	11	79	39	7	11	41	1.71
54849--54887	2	19.5	2	100	0	78	48	0	0	51	1.00
57456--57552	37	2.6	37	85	0	140	41	13	10	35	1.78
58056--58105	21	2.4	21	81	12	59	26	2	2	70	1.09
58402--58450	23	2.2	22	82	10	55	22	6	0	71	1.08
58437--58485	13	3.8	13	76	13	57	14	4	0	81	0.83
58415--58474	18	3.3	19	79	9	72	16	5	0	78	0.92
58419--58502	31	2.7	31	80	12	84	15	7	0	77	0.97
62937--62986	15	3.3	15	84	13	66	82	6	12	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62939--62978	16	2.6	15	85	14	55	80	7	12	0	0.91
62935--62984	18	2.7	18	76	11	57	80	8	12	0	0.92
62977--63020	23	1.9	23	100	0	88	72	6	18	2	1.17
63613--63655	22	2.0	22	100	0	86	39	23	13	23	1.90
64082--64118	18	2.0	19	94	5	67	18	5	32	43	1.73
64492--65972	106	14.0	106	89	2	2054	33	24	18	23	1.96
66571--66675	37	2.8	37	81	5	131	40	14	16	29	1.87
67530--67569	4	10.2	4	84	15	57	22	2	0	75	0.93
67537--67584	10	4.6	10	89	5	69	20	2	0	77	0.88
67536--67584	24	2.1	22	78	17	55	22	2	0	75	0.90
80393--80429	2	18.5	2	100	0	74	48	0	0	51	1.00
82590--82640	20	2.7	19	82	8	68	52	7	1	37	1.42
82822--82868	19	2.4	19	79	13	51	31	8	0	59	1.27
83631--83719	21	4.2	21	92	0	133	23	25	16	33	1.96
83606--83727	21	5.9	21	85	6	106	28	24	17	29	1.97
83606--83719	42	2.7	42	80	6	144	28	24	16	30	1.97
83870--83935	22	3.0	22	88	0	105	21	37	13	27	1.91
86397--86496	42	2.4	42	80	9	114	26	33	18	23	1.97
86397--86496	21	4.8	21	77	9	96	26	33	18	23	1.97
87902--87941	14	2.9	14	80	0	53	30	0	17	52	1.45
87851--87988	66	2.2	65	83	8	169	31	1	16	50	1.55
88077--88146	34	2.1	34	84	10	90	18	22	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88323--88411	39	2.3	39	94	0	151	19	15	19	46	1.85
89101--89150	25	2.0	25	92	0	82	42	22	10	26	1.84
89560--89600	18	2.3	18	91	0	64	17	2	26	53	1.56
91841--91894	24	2.2	24	83	0	63	42	14	18	24	1.88
92644--92691	22	2.2	22	96	0	87	27	8	33	31	1.86
92809--93038	19	11.6	20	74	11	136	27	14	24	33	1.94
92912--92951	21	1.9	21	94	0	71	37	15	22	25	1.93
92809--93038	20	11.6	21	73	12	107	27	14	24	33	1.94
93874--93918	3	15.0	3	100	0	90	66	0	0	33	0.92
100803--100854	2	26.0	2	100	0	104	50	0	0	50	1.00
106657--106708	21	2.5	21	84	3	70	40	19	23	17	1.91
106697--106810	20	5.7	20	83	6	113	31	25	18	24	1.97
106657--106789	61	2.2	62	79	6	146	36	22	19	21	1.95
106676--106810	61	2.2	61	82	2	164	33	24	19	22	1.97
107096--107120	1	25.0	1	100	0	50	0	0	0	100	0.00
107334--107400	19	3.5	19	85	2	89	49	25	14	10	1.76
107396--107566	19	9.1	19	81	10	181	12	21	22	44	1.85
107396--107566	39	4.6	38	77	10	181	12	21	22	44	1.85
109565--109657	42	2.2	42	84	0	123	21	37	16	24	1.93
109576--109645	21	3.3	21	64	7	52	22	34	18	24	1.96
111046--111081	14	2.6	14	95	0	63	30	0	25	44	1.54
111260--111410	19	8.7	19	64	21	80	15	22	20	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111264--111390	33	3.9	32	87	8	193	14	22	19	42	1.88
111257--111389	66	2.0	66	97	0	248	16	22	19	41	1.90
120722--120786	31	2.1	31	85	0	85	47	12	16	23	1.80

Tables:   1

The End!