genome.fa.s1322.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001322.1 Hibiscus syriacus cultivar Beakdansim tig00002576_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109003

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32--191	19	8.8	19	75	19	144	19	19	21	40	1.92
671--712	21	2.2	19	87	12	59	21	35	19	23	1.96
694--775	42	2.0	41	83	7	103	21	39	18	20	1.93
2096--2131	14	2.6	14	90	0	54	30	0	22	47	1.52
2257--2320	34	1.9	34	93	3	112	43	20	21	14	1.87
2329--2415	19	4.8	19	75	16	87	14	19	18	47	1.83
2420--2513	20	4.7	20	86	2	127	20	21	23	35	1.96
4908--4952	23	2.0	23	95	0	81	33	22	22	22	1.97
5811--5997	20	9.3	20	86	2	232	24	20	18	36	1.95
5994--6034	21	2.0	21	90	0	64	39	17	26	17	1.91
25809--25861	26	2.0	26	100	0	106	30	15	26	28	1.96
37466--37528	31	2.0	31	81	6	74	36	14	0	49	1.44
41248--41313	21	3.3	21	67	16	59	25	27	21	25	1.99
41224--41324	38	2.7	38	93	0	175	26	27	17	27	1.98
41231--41292	17	3.4	17	69	16	52	29	32	14	24	1.94
41265--41329	21	3.3	21	63	28	52	26	26	18	29	1.98
44427--44530	21	5.3	21	62	17	71	24	27	23	25	2.00
44406--44541	38	3.6	38	94	4	247	24	27	21	26	1.99
47339--47382	20	2.2	20	91	0	70	27	18	15	38	1.91
50245--50310	2	33.0	2	100	0	132	50	0	0	50	1.00
51338--51454	33	3.4	33	80	12	137	10	9	37	42	1.71
51338--51446	38	3.0	38	87	7	149	10	9	38	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56327--56387	22	2.8	22	85	2	79	40	0	0	59	0.98
56343--56378	14	2.5	14	90	4	54	38	0	0	61	0.96
62337--62450	60	1.9	60	85	3	158	42	14	11	32	1.81
64671--64738	33	2.1	33	94	0	118	38	8	4	48	1.54
66250--66618	45	8.2	45	82	1	366	29	20	10	40	1.85
67026--67081	22	2.5	22	100	0	112	23	25	16	35	1.94
67125--67176	22	2.5	22	87	6	72	28	26	15	28	1.96
67129--67183	22	2.6	21	83	11	67	29	29	12	29	1.93
72933--72967	18	2.0	17	88	5	52	62	0	0	37	0.95
73264--73288	13	1.9	13	100	0	50	32	8	8	52	1.60
80980--81072	38	2.4	38	82	10	118	31	11	5	51	1.61
82075--82102	2	14.0	2	100	0	56	50	0	0	50	1.00
85422--85563	60	2.4	60	79	4	153	35	14	13	35	1.86
94525--94584	20	2.9	21	90	7	95	30	25	26	18	1.98
94618--94662	22	2.0	22	86	4	63	28	31	26	13	1.94
95952--96164	103	2.1	103	93	0	372	26	14	23	35	1.93
96181--96248	23	3.0	23	91	0	100	22	26	26	25	2.00
103100--105847	255	10.8	256	91	2	4029	24	11	23	40	1.88
103100--105847	766	3.6	763	89	2	3985	24	11	23	40	1.88

Tables:   1

The End!