genome.fa.s1323.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001323.1 Hibiscus syriacus cultivar Beakdansim tig00002577_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120708

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536--574	2	19.5	2	100	0	78	48	0	0	51	1.00
7933--7957	6	4.2	6	100	0	50	16	32	36	16	1.90
13233--13307	32	2.3	32	84	8	91	37	4	22	36	1.73
14983--15419	217	2.0	218	86	2	619	27	16	19	37	1.93
19467--19524	19	2.8	21	84	10	66	22	34	25	17	1.96
19488--19530	19	2.3	19	84	8	52	20	32	32	13	1.92
23882--23922	10	4.1	10	87	0	55	29	29	0	41	1.56
23964--24004	18	2.3	18	91	4	66	29	4	0	65	1.13
26252--26336	35	2.5	33	78	14	91	25	8	10	55	1.62
29943--30055	51	2.2	51	81	6	122	23	26	31	18	1.97
33522--33609	40	2.2	40	89	0	131	55	14	3	26	1.55
33635--33693	17	3.6	17	81	9	86	52	16	3	27	1.60
33652--33702	15	3.3	15	78	10	66	56	19	1	21	1.51
33634--33702	32	2.2	32	100	0	138	53	20	2	23	1.59
38109--38158	19	2.5	20	78	15	59	50	2	2	46	1.24
40174--40231	21	2.8	21	89	0	89	31	24	25	18	1.98
41759--41833	23	3.3	22	75	12	71	24	21	20	34	1.96
45153--45201	21	2.3	21	92	0	89	30	20	30	18	1.96
45544--45577	18	1.9	17	88	5	50	20	2	17	58	1.51
55112--55216	37	2.8	37	85	0	138	42	15	12	29	1.83
55573--55615	18	2.5	17	85	7	61	25	4	2	67	1.22
55869--55924	21	2.7	20	75	8	58	25	3	0	71	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56117--56150	2	17.0	2	100	0	68	50	0	0	50	1.00
60117--60186	18	3.7	18	76	14	68	27	31	21	20	1.98
60132--60186	22	2.8	20	83	10	69	27	29	21	21	1.99
61701--61857	64	2.5	64	81	10	162	27	20	19	32	1.97
65225--65294	18	3.7	18	80	14	86	24	31	24	20	1.98
68564--69100	183	2.9	183	94	0	941	27	20	20	30	1.98
70282--70398	36	3.1	36	72	4	108	28	18	14	38	1.90
70241--70411	72	2.3	75	83	7	199	26	18	13	41	1.87
70280--70436	73	2.2	72	82	10	178	27	17	15	39	1.90
70430--70582	39	3.6	39	68	21	110	27	21	13	37	1.91
70485--70803	105	3.1	104	91	2	509	30	20	12	36	1.89
70703--70778	36	2.1	36	90	0	116	22	21	15	40	1.90
70978--71608	105	6.0	105	90	3	909	34	26	17	21	1.95
72151--72247	37	2.6	37	85	0	131	42	15	12	29	1.84
72611--72653	18	2.5	17	85	7	61	25	4	2	67	1.22
72651--72776	2	64.5	2	80	10	127	42	1	0	55	1.15
73266--73305	20	1.9	22	85	10	57	17	10	0	72	1.11
78915--78983	23	3.0	23	76	19	79	33	24	23	18	1.97
79088--79164	15	5.1	15	74	0	73	38	24	10	25	1.87
79088--79164	30	2.6	30	78	0	82	38	24	10	25	1.87
79658--79703	20	2.2	20	85	11	58	30	23	10	34	1.89
85803--85864	23	2.7	23	84	2	88	30	20	29	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85970--86045	30	2.5	30	82	0	89	38	21	13	27	1.90
87853--87898	20	2.4	20	79	17	53	30	21	15	32	1.94
95860--95893	16	2.1	16	94	0	59	58	5	23	11	1.55
97640--97680	3	13.7	3	100	0	82	65	0	0	34	0.93
98559--98595	2	18.5	2	100	0	74	51	0	0	48	1.00
98827--98864	2	19.0	2	100	0	76	50	0	0	50	1.00
100518--100542	4	6.2	4	100	0	50	52	24	0	24	1.48
100802--100836	18	1.9	18	88	0	52	71	2	25	0	1.00
101802--101829	3	9.3	3	100	0	56	0	0	35	64	0.94
108864--109041	99	1.8	96	87	6	268	30	3	11	53	1.53
111801--111887	44	2.0	44	90	0	138	32	25	17	25	1.97
115047--115099	16	3.4	16	75	19	67	33	13	26	26	1.93
115035--115104	30	2.3	30	95	0	122	32	11	27	28	1.91
115057--115105	13	3.5	13	75	20	53	36	10	28	24	1.88
115085--115144	23	2.8	21	77	10	59	40	5	23	31	1.76
118890--118965	20	3.8	20	80	13	84	30	18	26	25	1.98
119857--120013	60	2.5	64	79	11	175	27	17	26	28	1.97
119857--120013	63	2.6	61	80	10	178	27	17	26	28	1.97

Tables:   1

The End!