Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001324.1 Hibiscus syriacus cultivar Beakdansim tig00002580_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 131359
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:2008 original size:21 final size:21
Alignment explanation
Indices: 1984--2023 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
1974 TTTATTTTAT
1984 AACTTTATTTCAATTATCGTA
1 AACTTTATTTCAATTATCGTA
*
2005 AACTTTGTTTCAATTATCG
1 AACTTTATTTCAATTATCG
2024 AACTTGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.47
Consensus pattern (21 bp):
AACTTTATTTCAATTATCGTA
Found at i:2071 original size:33 final size:33
Alignment explanation
Indices: 2018--2115 Score: 155
Period size: 32 Copynumber: 3.0 Consensus size: 33
2008 TTTGTTTCAA
2018 TTATCGAACTT-GAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
2050 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
2083 TTATCAAAC-TGGAAGTATTTAAGTATTTCAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
2115 T
1 T
2116 ATGTTGAGTT
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
32 33 0.53
33 29 0.47
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (33 bp):
TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
Found at i:2144 original size:13 final size:13
Alignment explanation
Indices: 2101--2155 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
2091 CTGGAAGTAT
2101 TTAAGTATTTCAA
1 TTAAGTATTTCAA
* *
2114 TTATGTTGAGTT-AA
1 TTAAG-T-ATTTCAA
2128 TTAAGTATTTCAA
1 TTAAGTATTTCAA
*
2141 TTAAGTATTTAAA
1 TTAAGTATTTCAA
2154 TT
1 TT
2156 TATCGAACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.49
Consensus pattern (13 bp):
TTAAGTATTTCAA
Found at i:2566 original size:17 final size:18
Alignment explanation
Indices: 2546--2579 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2536 GTTTTTTTAT
2546 AACC-GATTTTTTAAAAA
1 AACCGGATTTTTTAAAAA
*
2563 AACCGGTTTTTTTAAAA
1 AACCGGATTTTTTAAAA
2580 CCGAAACCGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (18 bp):
AACCGGATTTTTTAAAAA
Found at i:2579 original size:15 final size:15
Alignment explanation
Indices: 2527--2582 Score: 58
Period size: 15 Copynumber: 3.6 Consensus size: 15
2517 ATCTGGAATA
*
2527 TTAAAATCGGTTTTT
1 TTAAAACCGGTTTTT
* *
2542 TTATAACCGATTTTT
1 TTAAAACCGGTTTTT
*
2557 TAAAAAAACCGGTTTTT
1 T--TAAAACCGGTTTTT
2574 TTAAAACCG
1 TTAAAACCG
2583 AAACCGGTTA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
15 20 0.62
17 12 0.38
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (15 bp):
TTAAAACCGGTTTTT
Found at i:2698 original size:15 final size:17
Alignment explanation
Indices: 2672--2703 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
2662 TTCTATGAGA
2672 AAAAACCGGAT-CGGAT
1 AAAAACCGGATCCGGAT
2688 AAAAACC-GATCCGGAT
1 AAAAACCGGATCCGGAT
2704 CGGTTTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.20
16 12 0.80
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (17 bp):
AAAAACCGGATCCGGAT
Found at i:5017 original size:27 final size:27
Alignment explanation
Indices: 4996--5231 Score: 310
Period size: 27 Copynumber: 8.7 Consensus size: 27
4986 CTCTTCCACT
* * * *
4996 CCGGCGTTTGGAACTCTTTCTTCAACT
1 CCGGCGTTTGGAACTCCTTCCTCGACA
* *
5023 CCGGCGTTTGGGACCCCTTCCTCGACA
1 CCGGCGTTTGGAACTCCTTCCTCGACA
* *
5050 CCGGCGTTTGGTACTCCGTCCTCGACA
1 CCGGCGTTTGGAACTCCTTCCTCGACA
* *
5077 CCGGCGTTTGGTACTCCTTCCTCAACA
1 CCGGCGTTTGGAACTCCTTCCTCGACA
* *
5104 CCGGCGTTTGGAACTCCGTCATCGACA
1 CCGGCGTTTGGAACTCCTTCCTCGACA
*
5131 CCCGCGTTTGGAACTCCTTCCTCGACA
1 CCGGCGTTTGGAACTCCTTCCTCGACA
* * * *
5158 CCCGCATTTGGGACTCCGTCCTCGACA
1 CCGGCGTTTGGAACTCCTTCCTCGACA
*
5185 CCCGCGTTTGGAACTCCTTCCTCGACA
1 CCGGCGTTTGGAACTCCTTCCTCGACA
5212 CCGGCGTTTGGAACTCCTTC
1 CCGGCGTTTGGAACTCCTTC
5232 GACACATCTT
Statistics
Matches: 184, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 184 1.00
ACGTcount: A:0.14, C:0.37, G:0.22, T:0.27
Consensus pattern (27 bp):
CCGGCGTTTGGAACTCCTTCCTCGACA
Found at i:10291 original size:43 final size:43
Alignment explanation
Indices: 10233--10419 Score: 178
Period size: 43 Copynumber: 4.4 Consensus size: 43
10223 TTTGTCACAA
* * *
10233 AAACGCCGCAATAGGTGTTGGTGTTTAACGGCGTTTTCCCTAC
1 AAACGCCGCAGTAGGTGTTGATATTTAACGGCGTTTTCCCTAC
* * * * *
10276 AAACACCGCAGTAGGTGTTGAGATTTCACGGCGTTTTACTTAC
1 AAACGCCGCAGTAGGTGTTGATATTTAACGGCGTTTTCCCTAC
* ** *
10319 AAACGCCGTAGTAGGTGTTGATATTTTGCGGCGTTTTTCC-AC
1 AAACGCCGCAGTAGGTGTTGATATTTAACGGCGTTTTCCCTAC
* * ** * * * *
10361 AAACGCGGTAAAAGGTGATGATGTTTAGCGGCGTTTTCCCCAC
1 AAACGCCGCAGTAGGTGTTGATATTTAACGGCGTTTTCCCTAC
*
10404 AAACGTCGCAGTAGGT
1 AAACGCCGCAGTAGGT
10420 TTTCAGATTT
Statistics
Matches: 116, Mismatches: 27, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
42 35 0.30
43 81 0.70
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (43 bp):
AAACGCCGCAGTAGGTGTTGATATTTAACGGCGTTTTCCCTAC
Found at i:10377 original size:42 final size:42
Alignment explanation
Indices: 10211--10408 Score: 130
Period size: 43 Copynumber: 4.6 Consensus size: 42
10201 CAATAGGTGT
* * * * *
10211 TATTTAGCGGCATTTGT-CACAAAAACGCCGCAATAGGTGTTGG
1 TATTTAGCGGCGTTT-TAC-CACAAACGCCGTAAAAGGTGTTGA
* * * * * **
10254 TGTTTAACGGCGTTTTCCCTACAAACACCGCAGTAGGTGTTGA
1 TATTTAGCGGCGTTTTACC-ACAAACGCCGTAAAAGGTGTTGA
* * **
10297 GATTTCA-CGGCGTTTTACTTACAAACGCCGTAGTAGGTGTTGA
1 TATTT-AGCGGCGTTTTAC-CACAAACGCCGTAAAAGGTGTTGA
* * * *
10340 TATTTTGCGGCGTTTTTCCACAAACGCGGTAAAAGGTGATGA
1 TATTTAGCGGCGTTTTACCACAAACGCCGTAAAAGGTGTTGA
* *
10382 TGTTTAGCGGCGTTTTCCCCACAAACG
1 TATTTAGCGGCGTTTT-ACCACAAACG
10409 TCGCAGTAGG
Statistics
Matches: 125, Mismatches: 24, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
42 35 0.28
43 89 0.71
44 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (42 bp):
TATTTAGCGGCGTTTTACCACAAACGCCGTAAAAGGTGTTGA
Found at i:10509 original size:42 final size:43
Alignment explanation
Indices: 10428--10518 Score: 105
Period size: 42 Copynumber: 2.1 Consensus size: 43
10418 GTTTTCAGAT
* *
10428 TTAGCGGTGTTTGTATCGAAAATGACACAATAAGGGTTGATAA
1 TTAGCGGTGTTTGTATCGAAAACGACACAATAAGGGTTGAGAA
* * * *
10471 TTAGCGGTGTTT-TATTGAAAACGCCGCAAT-AGGTGTTGAGAT
1 TTAGCGGTGTTTGTATCGAAAACGACACAATAAGG-GTTGAGAA
10513 TTAGCG
1 TTAGCG
10519 ACGTTTTTCA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
41 3 0.07
42 26 0.63
43 12 0.29
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.32
Consensus pattern (43 bp):
TTAGCGGTGTTTGTATCGAAAACGACACAATAAGGGTTGAGAA
Found at i:18465 original size:13 final size:13
Alignment explanation
Indices: 18447--18475 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
18437 CCACCGTATT
18447 CCGCCGCCGGCCA
1 CCGCCGCCGGCCA
18460 CCGCCGCCGGCCA
1 CCGCCGCCGGCCA
18473 CCG
1 CCG
18476 TAACGGTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.62, G:0.31, T:0.00
Consensus pattern (13 bp):
CCGCCGCCGGCCA
Found at i:19250 original size:3 final size:3
Alignment explanation
Indices: 19242--19371 Score: 217
Period size: 3 Copynumber: 43.7 Consensus size: 3
19232 TTAATATATT
* * * *
19242 TAA TAA TAA AAA TAA TAA TAA TAA TAT TAA TAA TAA TAT TAA TAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
19290 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
19337 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
19372 TGGATAAAAA
Statistics
Matches: 118, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
2 2 0.02
3 116 0.98
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:19947 original size:113 final size:113
Alignment explanation
Indices: 19665--20790 Score: 1901
Period size: 113 Copynumber: 9.9 Consensus size: 113
19655 GATATCAAAC
*
19665 AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* ** * * * * * *
19730 CATGAACTTTCTTTGGCCATGTTGATCCATCAAATGATGAATTTAAACAA
66 -ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAAGC-A
*
19780 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
19845 ATGAACTTTCTCTGGAAAATATGATCCACCAAATGATGGATTCAGGTA
66 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAAGCA
*
19893 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * *
19958 ATGAACTTTTTCTGGAAAAGATGATCCACCAAATGATGGGTTCAGGTA
66 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAAGCA
* *
20006 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGTTGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
20071 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAAGCA
66 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAAGCA
20119 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
20184 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGGTTCAGGTA
66 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAAGCA
*
20232 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
20297 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAAGCA
66 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAAGCA
20345 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
20410 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGGTTCAGGTA
66 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAAGCA
20458 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * * *
20523 ATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGATGAATTCAAGCA
66 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAAGCA
20571 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
20636 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAAGCA
66 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAAGCA
20684 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * *
20749 ATGAACTTTCTCTGGAAATGCTGATCCATCGAATGATGGATT
66 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATT
20791 TGAACTTTGC
Statistics
Matches: 957, Mismatches: 54, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
113 859 0.90
114 35 0.04
115 63 0.07
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (113 bp):
AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAAGCA
Found at i:21218 original size:22 final size:22
Alignment explanation
Indices: 21193--21269 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
21183 GATCAAGCTT
*
21193 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTGAAAAGAGAATCTA
* *
21215 TCATCTTTAAAAAGGGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
21237 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
21259 TCATCTTTGAA
1 TCATCTTTGAA
21270 GAGCGTAGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:24009 original size:83 final size:83
Alignment explanation
Indices: 23870--24078 Score: 409
Period size: 83 Copynumber: 2.5 Consensus size: 83
23860 GTTCCTACCA
23870 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAACT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAACT
23935 CAATGATTGGTTCTGTCC
66 CAATGATTGGTTCTGTCC
*
23953 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAACT
24018 CAATGATTGGTTCTGTCC
66 CAATGATTGGTTCTGTCC
24036 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
24079 GACACTGAAA
Statistics
Matches: 125, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 125 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.26
Consensus pattern (83 bp):
AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAACT
CAATGATTGGTTCTGTCC
Found at i:26231 original size:6 final size:6
Alignment explanation
Indices: 26217--26263 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
26207 CTTTATTCGA
* *
26217 TTTTCC TTTTTC TTTTTC TTTTTC TTTTTTC TTCTTC TTCTTTC TTT
1 TTTTTC TTTTTC TTTTTC TTTTTC -TTTTTC TTTTTC TT-TTTC TTT
26264 GCTGGATGAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
6 25 0.69
7 11 0.31
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTC
Found at i:26239 original size:13 final size:13
Alignment explanation
Indices: 26217--26263 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
26207 CTTTATTCGA
*
26217 TTTTCCTTTTTC-
1 TTTTTCTTTTTCT
26229 TTTTTCTTTTTCT
1 TTTTTCTTTTTCT
*
26242 TTTTTCTTCTTCT
1 TTTTTCTTTTTCT
*
26255 TCTTTCTTT
1 TTTTTCTTT
26264 GCTGGATGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
12 11 0.37
13 19 0.63
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTCTTTTTCT
Found at i:26245 original size:19 final size:19
Alignment explanation
Indices: 26217--26263 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
26207 CTTTATTCGA
* *
26217 TTTTCCTTTTTCTTTTTCT
1 TTTTCTTTTTTCTTCTTCT
26236 TTTTCTTTTTTCTTCTTCT
1 TTTTCTTTTTTCTTCTTCT
26255 TCTTTCTTT
1 T-TTTCTTT
26264 GCTGGATGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTCTTTTTTCTTCTTCT
Found at i:26857 original size:1 final size:1
Alignment explanation
Indices: 26851--26879 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
26841 TCTTTTGAGG
26851 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
26880 GGCTTGGATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:28253 original size:27 final size:27
Alignment explanation
Indices: 28223--28278 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
28213 GTAATTATGT
*
28223 AAAAATGAAAATGTAAATACAAACGTA
1 AAAAATGAAAATGCAAATACAAACGTA
* * *
28250 AAAAATGCAAATGCAAATTCAAATGTA
1 AAAAATGAAAATGCAAATACAAACGTA
28277 AA
1 AA
28279 TATGTGAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.61, C:0.09, G:0.11, T:0.20
Consensus pattern (27 bp):
AAAAATGAAAATGCAAATACAAACGTA
Found at i:28351 original size:14 final size:14
Alignment explanation
Indices: 28317--28369 Score: 70
Period size: 14 Copynumber: 3.7 Consensus size: 14
28307 TTGTGCAATA
*
28317 CAAATGCAAAAATG
1 CAAATGTAAAAATG
*
28331 CCAAATGTAAATATG
1 -CAAATGTAAAAATG
28346 CAAATGTAAAAATG
1 CAAATGTAAAAATG
*
28360 TAAATGTAAA
1 CAAATGTAAA
28370 TTATTTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 22 0.65
15 12 0.35
ACGTcount: A:0.55, C:0.09, G:0.13, T:0.23
Consensus pattern (14 bp):
CAAATGTAAAAATG
Found at i:31353 original size:13 final size:13
Alignment explanation
Indices: 31335--31363 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
31325 CCACCGTATT
31335 CCGCCGCCGGCCA
1 CCGCCGCCGGCCA
31348 CCGCCGCCGGCCA
1 CCGCCGCCGGCCA
31361 CCG
1 CCG
31364 TAACGGTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.62, G:0.31, T:0.00
Consensus pattern (13 bp):
CCGCCGCCGGCCA
Found at i:32135 original size:3 final size:3
Alignment explanation
Indices: 32127--32245 Score: 195
Period size: 3 Copynumber: 39.7 Consensus size: 3
32117 TTAATATATT
* * *
32127 TAA TAA TAA AAA TAA TAA TAA -ATA TAA TAA TAA TAT TAA TAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
32172 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32220 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
32246 TGGATAAAAA
Statistics
Matches: 108, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
2 1 0.01
3 106 0.98
4 1 0.01
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:34400 original size:82 final size:82
Alignment explanation
Indices: 34297--34488 Score: 257
Period size: 82 Copynumber: 2.4 Consensus size: 82
34287 GCCTATTTAT
* * *
34297 CGGCGTTT-T-CATAAAATTGCCGCTAAATTTCTATTATATTGCGGCGTTTGTATAAAAACGCCG
1 CGGCGTTTGTACA-AAAA-TGCCGCTAAAGTTATATTATATTGCGGCATTTGTATAAAAACGCCG
* *
34360 CTATATAT-TATATCTACTG
64 CAATAGATATA-ATCTACTG
*
34379 CGGCGTTTGTACAAAAATGCCGCTAAAGTTATATTATATTGCGGCATTTGTATAAAAACGCTGCA
1 CGGCGTTTGTACAAAAATGCCGCTAAAGTTATATTATATTGCGGCATTTGTATAAAAACGCCGCA
34444 ATAGATATAATCTACTG
66 ATAGATATAATCTACTG
* *
34461 -GGAGTTTGTACAAAAACGCCGCTAAAGT
1 CGGCGTTTGTACAAAAATGCCGCTAAAGT
34489 GCTATCCTTG
Statistics
Matches: 99, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
81 26 0.26
82 64 0.65
83 7 0.07
84 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (82 bp):
CGGCGTTTGTACAAAAATGCCGCTAAAGTTATATTATATTGCGGCATTTGTATAAAAACGCCGCA
ATAGATATAATCTACTG
Found at i:34436 original size:41 final size:40
Alignment explanation
Indices: 34297--34436 Score: 158
Period size: 41 Copynumber: 3.4 Consensus size: 40
34287 GCCTATTTAT
* *
34297 CGGCGTTT-TCATAAAATTGCCGCTAAATTTCTATTATATTG
1 CGGCGTTTGT-ATAAAAATGCCGCTAAA-TTATATTATATTG
* * *
34338 CGGCGTTTGTATAAAAACGCCGCTATATATTATA-TCTACTG
1 CGGCGTTTGTATAAAAATGCCGCTA-A-ATTATATTATATTG
*
34379 CGGCGTTTGTACAAAAATGCCGCTAAAGTTATATTATATTG
1 CGGCGTTTGTATAAAAATGCCGCTAAA-TTATATTATATTG
*
34420 CGGCATTTGTATAAAAA
1 CGGCGTTTGTATAAAAA
34437 CGCTGCAATA
Statistics
Matches: 83, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
39 1 0.01
40 6 0.07
41 69 0.83
42 6 0.07
43 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (40 bp):
CGGCGTTTGTATAAAAATGCCGCTAAATTATATTATATTG
Found at i:34476 original size:40 final size:41
Alignment explanation
Indices: 34336--34482 Score: 131
Period size: 41 Copynumber: 3.6 Consensus size: 41
34326 TCTATTATAT
* * * *
34336 TGCGGCGTTTGTATAAAAACGCCGCTATATAT-TATATCTAC
1 TGCGGAGTTTGTACAAAAACGCCGCAATAGATATA-ATCTAC
* * * * * *
34377 TGCGGCGTTTGTACAAAAATGCCGCTAA-AGTTATATTATAT
1 TGCGGAGTTTGTACAAAAACGCCGC-AATAGATATAATCTAC
* *
34418 TGCGGCA-TTTGTATAAAAACGCTGCAATAGATATAATCTAC
1 TGCGG-AGTTTGTACAAAAACGCCGCAATAGATATAATCTAC
34459 TG-GGAGTTTGTACAAAAACGCCGC
1 TGCGGAGTTTGTACAAAAACGCCGC
34483 TAAAGTGCTA
Statistics
Matches: 83, Mismatches: 18, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
39 1 0.01
40 20 0.24
41 59 0.71
42 3 0.04
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31
Consensus pattern (41 bp):
TGCGGAGTTTGTACAAAAACGCCGCAATAGATATAATCTAC
Found at i:35566 original size:22 final size:22
Alignment explanation
Indices: 35540--35588 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
35530 CACGTTTTCA
* *
35540 AAAGCTGTTATTTTTCTATTCG
1 AAAGCTATTATTCTTCTATTCG
*
35562 GAAGCTATTATTCTTCTATTCG
1 AAAGCTATTATTCTTCTATTCG
35584 AAAGC
1 AAAGC
35589 AGAAAAACAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (22 bp):
AAAGCTATTATTCTTCTATTCG
Found at i:36110 original size:25 final size:26
Alignment explanation
Indices: 36076--36128 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
36066 ATTACTCTAT
36076 TACGACGTTT-TTACACAAACGCCAC
1 TACGACGTTTGTTACACAAACGCCAC
** *
36101 TACGACGTTTGTTTGATAAACGCCAC
1 TACGACGTTTGTTACACAAACGCCAC
36127 TA
1 TA
36129 AATTACTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
TACGACGTTTGTTACACAAACGCCAC
Found at i:37643 original size:3 final size:3
Alignment explanation
Indices: 37635--37703 Score: 70
Period size: 3 Copynumber: 23.3 Consensus size: 3
37625 TTATAATTTA
* *
37635 TAT TAT TAT TAT TAT TAT TAC TAT TAT TAT TAA TAT TAT TAAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT
* * *
37680 T-T TAT CAT TTT TAT TAT TGT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
37704 TCCCTATTAC
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
2 4 0.07
3 47 0.87
4 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:45130 original size:75 final size:75
Alignment explanation
Indices: 45020--45159 Score: 253
Period size: 75 Copynumber: 1.9 Consensus size: 75
45010 CATTCAGTTA
* *
45020 CACACACACATAATATCAGCTTCACATTTCAGGACATCATGTAGAATCATTCAAAAACATTAATT
1 CACACACACATAAGATCAGCTTCACATTTCAGGACATCATATAGAATCATTCAAAAACATTAATT
45085 CAGTTAGTCG
66 CAGTTAGTCG
*
45095 CACACGCACATAAGATCAGCTTCACATTTCAGGACATCATATAGAATCATTCAAAAACATTAATT
1 CACACACACATAAGATCAGCTTCACATTTCAGGACATCATATAGAATCATTCAAAAACATTAATT
45160 GATCAATGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 62 1.00
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (75 bp):
CACACACACATAAGATCAGCTTCACATTTCAGGACATCATATAGAATCATTCAAAAACATTAATT
CAGTTAGTCG
Found at i:53179 original size:47 final size:48
Alignment explanation
Indices: 53128--53218 Score: 121
Period size: 47 Copynumber: 1.9 Consensus size: 48
53118 TCAAATTTGA
* * * *
53128 ATTCTGTTATGATACCTGACCTGGATTTTGATCTGATA-TTGACATGG
1 ATTCTGATATGATACATGACCTGGATTCTGATATGATACTTGACATGG
* *
53175 ATTCTGATCTGATACATGACTTGGATTCTGATATGATACTTGAC
1 ATTCTGATATGATACATGACCTGGATTCTGATATGATACTTGAC
53219 TTGAATTATG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
47 32 0.86
48 5 0.14
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (48 bp):
ATTCTGATATGATACATGACCTGGATTCTGATATGATACTTGACATGG
Found at i:53199 original size:24 final size:24
Alignment explanation
Indices: 53128--53221 Score: 109
Period size: 24 Copynumber: 4.0 Consensus size: 24
53118 TCAAATTTGA
* * *
53128 ATTCTGTTATGATACCTGACCTGG
1 ATTCTGATATGATACTTGACTTGG
* * *
53152 ATTTTGATCTGATA-TTGACATGG
1 ATTCTGATATGATACTTGACTTGG
* *
53175 ATTCTGATCTGATACATGACTTGG
1 ATTCTGATATGATACTTGACTTGG
53199 ATTCTGATATGATACTTGACTTG
1 ATTCTGATATGATACTTGACTTG
53222 AATTATGTTT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
23 20 0.34
24 39 0.66
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.40
Consensus pattern (24 bp):
ATTCTGATATGATACTTGACTTGG
Found at i:54348 original size:18 final size:19
Alignment explanation
Indices: 54312--54348 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
54302 CACGAAATGT
54312 AAGATTACCAGTAGGAATAA
1 AAGATTACCAG-AGGAATAA
54332 AAGATTACCAG-GGAATA
1 AAGATTACCAGAGGAATA
54349 GGATTACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.49, C:0.11, G:0.22, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGAGGAATAA
Found at i:59167 original size:32 final size:32
Alignment explanation
Indices: 59107--59171 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
59097 GGGGGTTTTT
* *
59107 AATGAGACATCCAATTCTTCTATCAAAAAAAA
1 AATGAGACATCCAATTATTATATCAAAAAAAA
* *
59139 AATGAGACATCCAATTATTATTTTAAAAAAAA
1 AATGAGACATCCAATTATTATATCAAAAAAAA
59171 A
1 A
59172 GTCTAATTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (32 bp):
AATGAGACATCCAATTATTATATCAAAAAAAA
Found at i:64723 original size:24 final size:24
Alignment explanation
Indices: 64691--64740 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
64681 CAACAGTAAC
* * *
64691 TGAACAATAACCACCGAATTGAGA
1 TGAAAAATAACCACCAAACTGAGA
*
64715 TGAAAAATAGCCACCAAACTGAGA
1 TGAAAAATAACCACCAAACTGAGA
64739 TG
1 TG
64741 CTCGTAGTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.46, C:0.20, G:0.18, T:0.16
Consensus pattern (24 bp):
TGAAAAATAACCACCAAACTGAGA
Found at i:67569 original size:33 final size:34
Alignment explanation
Indices: 67532--67597 Score: 98
Period size: 33 Copynumber: 1.9 Consensus size: 34
67522 AGGAAACTTA
* *
67532 GTTTTGAAAACATATA-ATATAGTTTTTAAAACG
1 GTTTTAAAAACATATAGATATAGCTTTTAAAACG
67565 GTTTTAAAAACATATAGTATATAGCTTTTAAAA
1 GTTTTAAAAACATATAG-ATATAGCTTTTAAAA
67598 ATAATTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 15 0.52
35 14 0.48
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (34 bp):
GTTTTAAAAACATATAGATATAGCTTTTAAAACG
Found at i:67637 original size:21 final size:20
Alignment explanation
Indices: 67595--67652 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 20
67585 ATAGCTTTTA
67595 AAAATAATTTTAAAAACTTAT
1 AAAATAATTTTAAAAA-TTAT
*
67616 AAAATAATTTTGAAAATGTAT
1 AAAATAATTTTAAAAAT-TAT
* *
67637 -ATATAATTTTTAAAAT
1 AAAATAATTTTAAAAAT
67653 AGTTTTGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 15 0.45
21 18 0.55
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.41
Consensus pattern (20 bp):
AAAATAATTTTAAAAATTAT
Found at i:67651 original size:32 final size:32
Alignment explanation
Indices: 67615--67710 Score: 120
Period size: 35 Copynumber: 2.9 Consensus size: 32
67605 TAAAAACTTA
* *
67615 TAAAATAATTTTGAAAATGTATATATAATTTT
1 TAAAATAGTTTTGAAAACGTATATATAATTTT
67647 TAAAATAGTTTTGAAAACGTATAGTATATAGTTTT
1 TAAAATAGTTTTGAAAACGTATA-TATA-A-TTTT
** *
67682 TAAAACGGTTTTGAAAACATATATATAAT
1 TAAAATAGTTTTGAAAACGTATATATAAT
67711 ATAGTTTTTA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
32 22 0.39
33 5 0.09
34 5 0.09
35 24 0.43
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (32 bp):
TAAAATAGTTTTGAAAACGTATATATAATTTT
Found at i:67682 original size:35 final size:34
Alignment explanation
Indices: 67615--67739 Score: 128
Period size: 32 Copynumber: 3.6 Consensus size: 34
67605 TAAAAACTTA
* *
67615 TAAAATAATTTTGAAAATGTATATATA-A-TTTT
1 TAAAATAGTTTTGAAAACGTATATATATAGTTTT
67647 TAAAATAGTTTTGAAAACGTATAGTATATAGTTTT
1 TAAAATAGTTTTGAAAACGTATA-TATATAGTTTT
** *
67682 TAAAACGGTTTTGAAAACATATATATAATATAGTTTT
1 TAAAATAGTTTTGAAAAC--GTATAT-ATATAGTTTT
*
67719 TAAAAATGGCTTTTGAAAACG
1 T-AAAATAG-TTTTGAAAACG
67740 GTTTTTGAAA
Statistics
Matches: 78, Mismatches: 7, Indels: 11
0.81 0.07 0.11
Matches are distributed among these distances:
32 21 0.27
33 4 0.05
34 1 0.01
35 20 0.26
36 1 0.01
37 15 0.19
38 6 0.08
39 10 0.13
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (34 bp):
TAAAATAGTTTTGAAAACGTATATATATAGTTTT
Found at i:67721 original size:37 final size:35
Alignment explanation
Indices: 67635--67738 Score: 127
Period size: 35 Copynumber: 2.9 Consensus size: 35
67625 TTGAAAATGT
* * *
67635 ATATATAATTTTTAAAATAGTTTTGAAAACGTATA
1 ATATATAGTTTTTAAAATGGTTTTGAAAACATATA
* *
67670 GTATATAGTTTTTAAAACGGTTTTGAAAACATATA
1 ATATATAGTTTTTAAAATGGTTTTGAAAACATATA
67705 TATAATATAGTTTTTAAAAATGGCTTTTGAAAAC
1 -AT-ATATAGTTTTT-AAAATGG-TTTTGAAAAC
67739 GGTTTTTGAA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
35 30 0.52
36 1 0.02
37 11 0.19
38 6 0.10
39 10 0.17
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.41
Consensus pattern (35 bp):
ATATATAGTTTTTAAAATGGTTTTGAAAACATATA
Found at i:67799 original size:4 final size:4
Alignment explanation
Indices: 67785--67828 Score: 52
Period size: 4 Copynumber: 10.5 Consensus size: 4
67775 ATAATATGTG
* *
67785 TTAT ATAT TTAT TTAGA TTAT ATTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTA-T TTAT -TTAT TTAT TTAT TTAT TTAT TT
67829 TTATTCTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
4 27 0.79
5 7 0.21
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (4 bp):
TTAT
Found at i:67831 original size:18 final size:21
Alignment explanation
Indices: 67790--67833 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
67780 ATGTGTTATA
67790 TATTTATTTAGATTATATTATT
1 TATTTATTTA-ATTATATTATT
67812 TATTTATTT-ATT-TATT-TT
1 TATTTATTTAATTATATTATT
67830 TATT
1 TATT
67834 CTTAACATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.27
19 4 0.18
20 3 0.14
22 9 0.41
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (21 bp):
TATTTATTTAATTATATTATT
Found at i:69764 original size:2 final size:2
Alignment explanation
Indices: 69757--69804 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
69747 TTGTAAATCA
69757 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69799 AT AT AT
1 AT AT AT
69805 GTATGAATGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71013 original size:35 final size:34
Alignment explanation
Indices: 70777--71069 Score: 191
Period size: 30 Copynumber: 8.5 Consensus size: 34
70767 GTATACATAA
*
70777 TAAATATAGTTTTTGAAATA-TATAATATATAG-TTT
1 TAAA-ATAG-TTTTGAAA-ACTATAGTATATAGTTTT
70812 TAGGAAACTTAGTTTTGAAAAC-AT-GTAATATAGTTTT
1 TA--AAA--TAGTTTTGAAAACTATAGT-ATATAGTTTT
** *
70849 TAAAACGGTTTTAAAAACATATAGTATATAGTTTTT
1 TAAAATAGTTTTGAAAAC-TATAGTATATAG-TTTT
* * * *
70885 TAAAATAATTTT-AAAAATGTA-TAATATAATTTT
1 TAAAATAGTTTTGAAAACTATAGT-ATATAGTTTT
* * *
70918 TGAAATAATTTTG-AAA--AT-GTATATAATTTT
1 TAAAATAGTTTTGAAAACTATAGTATATAGTTTT
*
70948 TAAAATAGTTTTG-AAA--AT-GTATATAATTTT
1 TAAAATAGTTTTGAAAACTATAGTATATAGTTTT
70978 TAAAATAGTTTTGAAAACGTATAGTATATAGTTTT
1 TAAAATAGTTTTGAAAAC-TATAGTATATAGTTTT
** *
71013 TAAAACGGTTTTGAAAACATATATATAATATAGTTTT
1 TAAAATAGTTTTGAAAAC-TATA-GT-ATATAGTTTT
*
71050 TAAAAATGGCTTTTGAAAAC
1 T-AAAATAG-TTTTGAAAAC
71070 GGTTTTTGAA
Statistics
Matches: 215, Mismatches: 20, Indels: 42
0.78 0.07 0.15
Matches are distributed among these distances:
30 51 0.24
31 5 0.02
33 29 0.13
34 10 0.05
35 49 0.23
36 26 0.12
37 26 0.12
38 9 0.04
39 10 0.05
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (34 bp):
TAAAATAGTTTTGAAAACTATAGTATATAGTTTT
Found at i:71144 original size:18 final size:17
Alignment explanation
Indices: 71115--71148 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
71105 TATAATATAT
71115 GTTATATATTTATTTAG
1 GTTATATATTTATTTAG
71132 GTTATATTATTTATTTA
1 GTTATA-TATTTATTTA
71149 TTTTTATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (17 bp):
GTTATATATTTATTTAG
Found at i:72707 original size:13 final size:15
Alignment explanation
Indices: 72677--72707 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
72667 TATATTGATT
72677 TATATTTTATTAATA
1 TATATTTTATTAATA
72692 TATATTTTATTAATA
1 TATATTTTATTAATA
72707 T
1 T
72708 GAGGTAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TATATTTTATTAATA
Found at i:75747 original size:31 final size:31
Alignment explanation
Indices: 75704--75808 Score: 92
Period size: 31 Copynumber: 3.5 Consensus size: 31
75694 ATTTTGATAG
* ** *
75704 ATTTAGGGGTTAAATTTATACTTTATCTAAA
1 ATTTAGGAGTTAAATAAATACTTTATATAAA
*
75735 ATTTAGGAGTTAAATAAATATTTTATATAAA
1 ATTTAGGAGTTAAATAAATACTTTATATAAA
* * *
75766 ATTTAAGA-TCAAATTAATA-TTCTA-ATAAA
1 ATTTAGGAGTTAAATAAATACTT-TATATAAA
75795 ATTT-GAGAGTTAAA
1 ATTTAG-GAGTTAAA
75809 GATAAAATTT
Statistics
Matches: 61, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
29 13 0.21
30 15 0.25
31 33 0.54
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.41
Consensus pattern (31 bp):
ATTTAGGAGTTAAATAAATACTTTATATAAA
Found at i:77665 original size:27 final size:27
Alignment explanation
Indices: 77613--77665 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
77603 CAACGTCCAA
**
77613 GTGACAAAAACTTAATAAAATGATAAC
1 GTGACAAAAACTTAATAAAACAATAAC
*
77640 GTGACAAAAGCTTAATAAAACAATAA
1 GTGACAAAAACTTAATAAAACAATAA
77666 AGAAAATGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.57, C:0.11, G:0.11, T:0.21
Consensus pattern (27 bp):
GTGACAAAAACTTAATAAAACAATAAC
Found at i:77713 original size:30 final size:30
Alignment explanation
Indices: 77664--77741 Score: 129
Period size: 30 Copynumber: 2.6 Consensus size: 30
77654 ATAAAACAAT
*
77664 AAAGAAAATGACAAAAAATATACAAATATGA
1 AAAGAAAGTGAC-AAAAATATACAAATATGA
77695 AAAGAAAGTGACAAAAATATACAAATATGA
1 AAAGAAAGTGACAAAAATATACAAATATGA
*
77725 AAAGAAAGTGACCAAAA
1 AAAGAAAGTGACAAAAA
77742 CTTAATTCAC
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 34 0.76
31 11 0.24
ACGTcount: A:0.65, C:0.08, G:0.13, T:0.14
Consensus pattern (30 bp):
AAAGAAAGTGACAAAAATATACAAATATGA
Found at i:88839 original size:53 final size:54
Alignment explanation
Indices: 88775--88897 Score: 185
Period size: 53 Copynumber: 2.3 Consensus size: 54
88765 CAAAAAATTA
* * * *
88775 AAACCCTAAACTTAATCACTATTCAGTATAATGTAGCATCAAAAAC-TCTCTTG
1 AAACCCGAAACTTAATCACTATTCAATATAATGCAGCATCAAAAACATCTCTTC
*
88828 AAACCCGAAACTTAATCACTATTCAATATAATGCAGCATCAAATACTATCTCTTC
1 AAACCCGAAACTTAATCACTATTCAATATAATGCAGCATCAAAAAC-ATCTCTTC
88883 AAACCCGAAACTTAA
1 AAACCCGAAACTTAA
88898 ATAGCTTATT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
53 42 0.67
55 21 0.33
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (54 bp):
AAACCCGAAACTTAATCACTATTCAATATAATGCAGCATCAAAAACATCTCTTC
Found at i:91998 original size:16 final size:16
Alignment explanation
Indices: 91977--92008 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
91967 ACTATTCACA
*
91977 TGAATAGTGAATTTCG
1 TGAATAGTGAAATTCG
91993 TGAATAGTGAAATTCG
1 TGAATAGTGAAATTCG
92009 GTCGGCGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.34
Consensus pattern (16 bp):
TGAATAGTGAAATTCG
Found at i:97351 original size:11 final size:10
Alignment explanation
Indices: 97335--97372 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
97325 AAAATTATAT
97335 TTATTTTCTCA
1 TTATTTT-TCA
97346 TTATTTTTCA
1 TTATTTTTCA
97356 TTTATTTTT-A
1 -TTATTTTTCA
97366 TTATTTT
1 TTATTTT
97373 ATTACTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 7 0.27
10 4 0.15
11 15 0.58
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (10 bp):
TTATTTTTCA
Found at i:97361 original size:22 final size:20
Alignment explanation
Indices: 97333--97372 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
97323 GGAAAATTAT
97333 ATTTATTTTCTCATTATTTTTC
1 ATTTATTTT-T-ATTATTTTTC
97355 ATTTATTTTTATTATTTT
1 ATTTATTTTTATTATTTT
97373 ATTACTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 1 0.06
22 9 0.50
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.72
Consensus pattern (20 bp):
ATTTATTTTTATTATTTTTC
Found at i:99463 original size:55 final size:55
Alignment explanation
Indices: 99397--99558 Score: 288
Period size: 55 Copynumber: 2.9 Consensus size: 55
99387 CCCACTACCA
* *
99397 ATACGGAAATTCATAAACTTATTATAAATTTCTTAGTTTTTCACACAAAGTGCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
99452 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
**
99507 ATACATAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTG
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTG
99559 TCATTTGGTA
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 103 1.00
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36
Consensus pattern (55 bp):
ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
Found at i:99908 original size:20 final size:20
Alignment explanation
Indices: 99883--99954 Score: 90
Period size: 20 Copynumber: 3.5 Consensus size: 20
99873 TAGCTCAATA
99883 GTATCGATACCCATACCATG
1 GTATCGATACCCATACCATG
* **
99903 GTATCGATACTTCTATATTATG
1 GTATCGATAC--CCATACCATG
*
99925 GTATCGATACCCTTACCATG
1 GTATCGATACCCATACCATG
99945 GTATCGATAC
1 GTATCGATAC
99955 TACTATACTA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 26 0.60
22 17 0.40
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (20 bp):
GTATCGATACCCATACCATG
Found at i:99928 original size:22 final size:21
Alignment explanation
Indices: 99883--99981 Score: 103
Period size: 22 Copynumber: 4.7 Consensus size: 21
99873 TAGCTCAATA
* *
99883 GTATCGATAC-CCATACCATG
1 GTATCGATACTCTATACTATG
*
99903 GTATCGATACTTCTATATTATG
1 GTATCGATAC-TCTATACTATG
* *
99925 GTATCGATACCCT-TACCATG
1 GTATCGATACTCTATACTATG
99945 GTATCGATACTACTATACTATG
1 GTATCGATACT-CTATACTATG
* *
99967 TTACCGATACTCTAT
1 GTATCGATACTCTAT
99982 TACGGTACCG
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
20 25 0.38
21 8 0.12
22 32 0.49
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.35
Consensus pattern (21 bp):
GTATCGATACTCTATACTATG
Found at i:99930 original size:42 final size:42
Alignment explanation
Indices: 99883--99976 Score: 143
Period size: 42 Copynumber: 2.2 Consensus size: 42
99873 TAGCTCAATA
* *
99883 GTATCGATACCCATACCATGGTATCGATACTTCTATATTATG
1 GTATCGATACCCATACCATGGTATCGATACTACTATACTATG
*
99925 GTATCGATACCCTTACCATGGTATCGATACTACTATACTATG
1 GTATCGATACCCATACCATGGTATCGATACTACTATACTATG
* *
99967 TTACCGATAC
1 GTATCGATAC
99977 TCTATTACGG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (42 bp):
GTATCGATACCCATACCATGGTATCGATACTACTATACTATG
Found at i:100085 original size:21 final size:21
Alignment explanation
Indices: 100059--100112 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
100049 CCCCCTATTG
100059 GTATCGATACTACTTGCATCA
1 GTATCGATACTACTTGCATCA
100080 GTATCGATACTACTTGCATCA
1 GTATCGATACTACTTGCATCA
100101 GTATCGATACTA
1 GTATCGATACTA
100113 GTCAGCTGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (21 bp):
GTATCGATACTACTTGCATCA
Found at i:101758 original size:49 final size:49
Alignment explanation
Indices: 101703--101832 Score: 217
Period size: 49 Copynumber: 2.7 Consensus size: 49
101693 GAAGCTATAA
* *
101703 TTAGTTGGTATTTGATTTGTTATAGA-TGATTTTTAGACACCTTTTAGAT
1 TTAGTTGGTATCTAATTTGTTATA-ATTGATTTTTAGACACCTTTTAGAT
101752 TTAGTTGGTATCTAATTTGTTATAATTGATTTTTAGACACCTTTTAGAT
1 TTAGTTGGTATCTAATTTGTTATAATTGATTTTTAGACACCTTTTAGAT
*
101801 TTAGTTGGTATCTAATTTGTTATAATTTATTT
1 TTAGTTGGTATCTAATTTGTTATAATTGATTT
101833 ATTTATTTAA
Statistics
Matches: 77, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
48 1 0.01
49 76 0.99
ACGTcount: A:0.25, C:0.06, G:0.15, T:0.53
Consensus pattern (49 bp):
TTAGTTGGTATCTAATTTGTTATAATTGATTTTTAGACACCTTTTAGAT
Found at i:104864 original size:2 final size:2
Alignment explanation
Indices: 104859--104888 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
104849 AAAAAAATTA
104859 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
104889 TTTAAAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106142 original size:37 final size:38
Alignment explanation
Indices: 106067--106142 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
106057 ACTTAACAGG
106067 CACACGCCTTAACCACTCACCATCACTTTGTTTGCACT
1 CACACGCCTTAACCACTCACCATCACTTTGTTTGCACT
106105 CACACGCCTTAACCACTCACCATC-CTTTGTTTGCACT
1 CACACGCCTTAACCACTCACCATCACTTTGTTTGCACT
106142 C
1 C
106143 GAATCTGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 14 0.37
38 24 0.63
ACGTcount: A:0.22, C:0.41, G:0.08, T:0.29
Consensus pattern (38 bp):
CACACGCCTTAACCACTCACCATCACTTTGTTTGCACT
Found at i:109275 original size:20 final size:20
Alignment explanation
Indices: 109250--109292 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
109240 AAACTAGGTT
109250 CACTTGGTTATTCAAAGGAC
1 CACTTGGTTATTCAAAGGAC
109270 CACTTGGTTATTCAAAGGAC
1 CACTTGGTTATTCAAAGGAC
109290 CAC
1 CAC
109293 AATAACAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (20 bp):
CACTTGGTTATTCAAAGGAC
Found at i:111924 original size:3 final size:3
Alignment explanation
Indices: 111916--111982 Score: 64
Period size: 3 Copynumber: 21.7 Consensus size: 3
111906 TATGAAAATA
* * *
111916 AAT AAT AAT ATT AGT AAT AAT AAT GAT AAT AAT AAT AAT AAT AAGGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA--T
*
111963 AAT AATT AA- ATT AAT AAT AA
1 AAT AA-T AAT AAT AAT AAT AA
111983 ATTAGAACCC
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
2 1 0.02
3 46 0.87
4 3 0.06
5 3 0.06
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:111977 original size:12 final size:11
Alignment explanation
Indices: 111911--111986 Score: 53
Period size: 12 Copynumber: 6.5 Consensus size: 11
111901 TGTAATATGA
*
111911 AAATAAATAAT
1 AAATTAATAAT
*
111922 AATATTAGTAAT
1 AA-ATTAATAAT
* *
111934 AATAATGATAAT
1 AA-ATTAATAAT
*
111946 AATAATAATAAT
1 AA-ATTAATAAT
**
111958 AAGGTAATAATT
1 AAATTAATAA-T
111970 AAATTAATAAT
1 AAATTAATAAT
111981 AAATTA
1 AAATTA
111987 GAACCCAAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
11 15 0.28
12 38 0.72
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (11 bp):
AAATTAATAAT
Found at i:112503 original size:138 final size:138
Alignment explanation
Indices: 112228--112647 Score: 468
Period size: 139 Copynumber: 3.0 Consensus size: 138
112218 TGGAGATGAT
* * * * * *
112228 TTTGGTGACAACACGGTTCCTACGTGATGAGGAAGTTTGGCTATCTAAGGATGATGCTGCTCCTG
1 TTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTATGGTTATCTGAGGATGATGCTGCTTCTA
* * * * * *
112293 CATG-TTAAGGAGATGTGGTCGGTGGACGACATTGTTCCTACGTGGTGAGGACGTCTAGCCATCT
66 CGTGATT-AGGAGATCTGGTC-GTGGACGACATTATTCCTACGTGATGAGGAAGTCTAGTCATCT
112357 TTAGGGATAA
129 TTAGGGATAA
* * ** *
112367 TTTGGAGACAACACGGTTCTTACGTGATAAAAAAGTCTGGTTATCTGAGGATGATG-TGCTTCTA
1 TTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTATGGTTATCTGAGGATGATGCTGCTTCTA
* * * * *
112431 CGTGATTATGATATCTGGTATGTGGACGATATTATTCCTACGTGATGAGGAAGTCTAGTCATTTT
66 CGTGATTAGGAGATCTGGT-CGTGGACGACATTATTCCTACGTGATGAGGAAGTCTAGTCATCTT
112496 TAGGGATAA
130 TAGGGATAA
* * * * **
112505 TTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTATGGTTATTTGAGGTTGACGTTATTTCTA
1 TTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTATGGTTATCTGAGGATGATGCTGCTTCTA
* * * * * *
112570 CGTGATGAGGAGATCTGGTCGATGGACGACATTATCCCTATGTGATGAAGACA-ACTAGTCGTCT
66 CGTGATTAGGAGATCTGGTCG-TGGACGACATTATTCCTACGTGATGAGGA-AGTCTAGTCATCT
112634 TTAGGGATAA
129 TTAGGGATAA
112644 TTTG
1 TTTG
112648 TTTCAAGAGA
Statistics
Matches: 234, Mismatches: 42, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
138 114 0.49
139 119 0.51
140 1 0.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (138 bp):
TTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTATGGTTATCTGAGGATGATGCTGCTTCTA
CGTGATTAGGAGATCTGGTCGTGGACGACATTATTCCTACGTGATGAGGAAGTCTAGTCATCTTT
AGGGATAA
Found at i:112668 original size:21 final size:21
Alignment explanation
Indices: 112642--112683 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
112632 CTTTAGGGAT
112642 AATTTGTTTCAAGAGAAACAA
1 AATTTGTTTCAAGAGAAACAA
*
112663 AATTTGTTTCAAGGGAAACAA
1 AATTTGTTTCAAGAGAAACAA
112684 TCTCAATTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.29
Consensus pattern (21 bp):
AATTTGTTTCAAGAGAAACAA
Found at i:112748 original size:37 final size:37
Alignment explanation
Indices: 112697--113165 Score: 323
Period size: 37 Copynumber: 13.4 Consensus size: 37
112687 CAATTCTTTA
*
112697 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
*
112734 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
* ** ** ***
112770 TGTTTCAAGGGAAACAATCTC-A-ATTG-TTTAA---
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
112801 -GTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
* * * *
112836 TTTTTCAAGAGAAACTGTGTCAAGTGAGACAAAATTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
* * ** *
112873 TATTTCGAGAGAAACTGTCTCAATCGAG--ATAA-TT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
* * ** * ** *
112907 TTTTTCAAGGGAAACAATATC-A-ATTG------TTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
112936 ATGTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAACTT
1 -TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
* *
112973 TGTTTCAAGAGAAACTGTCTCAAGTGAGACGAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
* ** *
113010 TGTTTCAAGAGAAA-TAATCTC-A-ATTG------TTT
1 TGTTTCAAGAGAAACT-GTCTCAAGAGAGACAAAACTT
113039 ATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
1 -TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
* ** *
113077 TGTTTCAATAGAAACTGTCTCAAGAGAGATGAAACAT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
** * *
113114 TGTTTTGAGAGAAACTGTCTCAAGCGAGACAAAATTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
*
113151 TGTTTCGAGAGAAAC
1 TGTTTCAAGAGAAAC
113166 AATCTCAAAG
Statistics
Matches: 335, Mismatches: 68, Indels: 58
0.73 0.15 0.13
Matches are distributed among these distances:
29 4 0.01
30 51 0.15
31 4 0.01
32 9 0.03
33 3 0.01
34 18 0.05
35 5 0.01
36 77 0.23
37 162 0.48
38 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (37 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
Found at i:112811 original size:66 final size:66
Alignment explanation
Indices: 112735--112987 Score: 251
Period size: 66 Copynumber: 3.8 Consensus size: 66
112725 ACAAAACTTT
* * *
112735 GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAATCTCAATTGTTTA
1 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATATCAATTGTTTA
112800 A
66 A
* * ** * *
112801 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAACTTTTTTTCAAGAGAAACTGTGTCAAGTGAGAC
1 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATATCAA-T-TG--
*
112866 AAAATTTTA
62 ----TTTAA
* ** * * *
112875 -TTTCGAGAGAAACTGTCTCAATCGAG--ATAATTTTTTTCAAGGGAAACAATATCAATTGTTTA
1 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATATCAATTGTTTA
*
112937 T
66 A
*
112938 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAACTTTGTTTCAAGAGAAAC
1 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAAC
112988 TGTCTCAAGT
Statistics
Matches: 148, Mismatches: 28, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
63 3 0.02
64 23 0.16
66 68 0.46
67 1 0.01
68 1 0.01
69 1 0.01
70 1 0.01
71 23 0.16
73 23 0.16
74 4 0.03
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (66 bp):
GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATATCAATTGTTTA
A
Found at i:112887 original size:103 final size:103
Alignment explanation
Indices: 112650--112872 Score: 367
Period size: 103 Copynumber: 2.2 Consensus size: 103
112640 ATAATTTGTT
* * *
112650 TCAAGAGAAACAAAATTTGTTTCAAGGGAAACAATCTCAATTCTTTATGTTTCAAGGGAAACTGT
1 TCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAATTCTTTAAGTTTCAAGAGAAACTGT
112715 CTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTC
66 CTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTC
* *
112753 TCAAGGGAGACAAAATTTGTTTCAAGGGAAACAATCTCAATTGTTTAAGTTTCAAGAGAAACTGT
1 TCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAATTCTTTAAGTTTCAAGAGAAACTGT
* *
112818 CTCAAGAGAGAC-AAACTTTTTTTCAAGAGAAACTGTG
66 CTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTC
*
112855 TCAAGTGAGACAAAATTT
1 TCAAGAGAGACAAAATTT
112873 TATTTCGAGA
Statistics
Matches: 112, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
102 40 0.36
103 72 0.64
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (103 bp):
TCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAATTCTTTAAGTTTCAAGAGAAACTGT
CTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTC
Found at i:112981 original size:21 final size:21
Alignment explanation
Indices: 112956--113021 Score: 63
Period size: 22 Copynumber: 3.4 Consensus size: 21
112946 AGAAACTGTC
112956 TCAAGAGAGACAAACTTTGTT
1 TCAAGAGAGACAAACTTTGTT
*
112977 TC-A-AGAG--AAAC--TGTC
1 TCAAGAGAGACAAACTTTGTT
*
112992 TCAAGTGAGACGAAACTTTGTT
1 TCAAGAGAGAC-AAACTTTGTT
113014 TCAAGAGA
1 TCAAGAGA
113022 AATAATCTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 13
0.67 0.08 0.25
Matches are distributed among these distances:
15 5 0.15
16 1 0.03
17 7 0.21
19 4 0.12
20 5 0.15
21 2 0.06
22 10 0.29
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (21 bp):
TCAAGAGAGACAAACTTTGTT
Found at i:113033 original size:137 final size:138
Alignment explanation
Indices: 112697--113023 Score: 512
Period size: 137 Copynumber: 2.4 Consensus size: 138
112687 CAATTCTTTA
* * **
112697 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGGGAG
1 TGTTTCAAGAGAAACTGTCTCAAGTGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAATCGAG
*
112762 ACAAAATTTGTTTCAAGGGAAACAATCTCAATTGTTTAAGTTTCAAGAGAAACTGTCTCAAGAGA
66 A-AAAATTTGTTTCAAGGGAAACAATATCAATTGTTTAAGTTTCAAGAGAAACTGTCTCAAGAGA
112827 GACAAACTT
130 GACAAACTT
* * * * *
112836 TTTTTCAAGAGAAACTGTGTCAAGTGAGACAAAATTTTATTTCGAGAGAAACTGTCTCAATCGAG
1 TGTTTCAAGAGAAACTGTCTCAAGTGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAATCGAG
* * *
112901 -ATAATTTTTTTCAAGGGAAACAATATCAATTGTTTATGTTTCAAGAGAAACTGTCTCAAGAGAG
66 AAAAATTTGTTTCAAGGGAAACAATATCAATTGTTTAAGTTTCAAGAGAAACTGTCTCAAGAGAG
112965 ACAAACTT
131 ACAAACTT
*
112973 TGTTTCAAGAGAAACTGTCTCAAGTGAGACGAAACTTTGTTTCAAGAGAAA
1 TGTTTCAAGAGAAACTGTCTCAAGTGAGACAAAACTTTGTTTCAAGAGAAA
113024 TAATCTCAAT
Statistics
Matches: 169, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
137 113 0.67
139 56 0.33
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (138 bp):
TGTTTCAAGAGAAACTGTCTCAAGTGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAATCGAG
AAAAATTTGTTTCAAGGGAAACAATATCAATTGTTTAAGTTTCAAGAGAAACTGTCTCAAGAGAG
ACAAACTT
Found at i:113050 original size:103 final size:103
Alignment explanation
Indices: 112838--113128 Score: 392
Period size: 103 Copynumber: 2.8 Consensus size: 103
112828 ACAAACTTTT
* * * * *
112838 TTTCAAGAGAAACTGTGTCAAGTGAGACAAAATTTTATTTCGAGAGAAACTGTCTCAA-TCGAGA
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGT-GAGA
* * *
112902 -TAA-TTTTTTTCAAGGGAAACAATATCAATTGTTTATG
65 GAAACTTTGTTTCAAGAGAAACAATATCAATTGTTTATG
112939 TTTCAAGAGAAACTGTCTCAAGAGAGAC-AAACTTTGTTTCAAGAGAAACTGTCTCAAGTGAGAC
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGTGAGA-
* *
113003 GAAACTTTGTTTCAAGAGAAATAATCTCAATTGTTTATG
65 GAAACTTTGTTTCAAGAGAAACAATATCAATTGTTTATG
* *
113042 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAATAGAAACTGTCTCAAGAGAGAT
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGTGAGA-
* **
113107 GAAACATTGTTTTGAGAGAAAC
65 GAAACTTTGTTTCAAGAGAAAC
113129 TGTCTCAAGC
Statistics
Matches: 168, Mismatches: 17, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
100 30 0.18
101 27 0.16
102 2 0.01
103 58 0.35
104 51 0.30
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (103 bp):
TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGTGAGAG
AAACTTTGTTTCAAGAGAAACAATATCAATTGTTTATG
Found at i:113135 original size:104 final size:104
Alignment explanation
Indices: 112838--113136 Score: 376
Period size: 104 Copynumber: 2.9 Consensus size: 104
112828 ACAAACTTTT
* * * * * **
112838 TTTCAAGAGAAACTGTGTCAAGTGAGACAAAATTTTATTTCGAGAGAAACTGTCTCAATCGAGAT
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGAGAGAT
* * * *
112903 ---A-ATTTTTTTCAAGGGAAACAATATCAATTGTTTATG
66 GAAACATTGTTTT-AAGAGAAACTATCTCAATTGTTTATG
* *
112939 TTTCAAGAGAAACTGTCTCAAGAGAGAC-AAACTTTGTTTCAAGAGAAACTGTCTCAAGTGAGAC
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGAGAGAT
* *
113003 GAAACTTTGTTTCAAGAGAAA-TAATCTCAATTGTTTATG
66 GAAACATTGTTTTAAGAGAAACT-ATCTCAATTGTTTATG
*
113042 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAATAGAAACTGTCTCAAGAGAGAT
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGAGAGAT
* *
113107 GAAACATTGTTTTGAGAGAAACTGTCTCAA
66 GAAACATTGTTTTAAGAGAAACTATCTCAA
113137 GCGAGACAAA
Statistics
Matches: 170, Mismatches: 21, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
100 30 0.18
101 26 0.15
103 51 0.30
104 62 0.36
105 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (104 bp):
TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGAGAGAT
GAAACATTGTTTTAAGAGAAACTATCTCAATTGTTTATG
Found at i:113292 original size:278 final size:274
Alignment explanation
Indices: 112801--113310 Score: 600
Period size: 278 Copynumber: 1.8 Consensus size: 274
112791 AATTGTTTAA
* * *
112801 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAACTTTTTTTCAAGAGAAACTGTGTCAAGTGAGAC
1 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAACTTGTTTTCAAGAGAAACTGTCTCAAGCGAGAC
** *
112866 AAAATTTTATTTCGAGAGAAACTGTCTCAATCGAGATAATTTTTTTCAAGGGAAACAATATCAAT
66 AAAATTTTATTTCGAGAGAAACAATCTCAAACGAGATAATTTTTTTCAAGGGAAACAATATCAA-
* * *
112931 TGTTTATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAACTTTGTTTCAAGAGAAACTGTCTCAA
130 TATTTATGTTTCAAGAAAAACTGTCTCAAGAGAGACAAACTTTGTTT-AAGAGAAAC-ATCTCAA
*
112996 GTGAGACGAAACTTTGTTTCAAGAGAAATAATCTCAATTGTTTATGTTTCAAGAGAAACTGTCTC
193 GTGAGACGAAACTTTGTTTCAAGAGAAACAATCTCAATTGTTTATGTTTCAAGAGAAACTGTCTC
113061 AAGAGAGACAAAACTTT
258 AAGAGAGACAAAACTTT
* * *
113078 GTTTCAATAGAAACTGTCTCAAGAGAGATGAAACATTGTTTT-GAGAGAAACTGTCTCAAGCGAG
1 GTTTCAAGAGAAACTGTCTCAAGAGAGA-CAAAC-TTGTTTTCAAGAGAAACTGTCTCAAGCGAG
* * ** * *
113142 ACAAAATTTTGTTTCGAGAGAAACAATCTCAAAGGTTTATCAATTTTGTTTCAAGTGAAACAATT
64 ACAAAATTTTATTTCGAGAGAAACAATCTCAAACG-AGAT-AATTTT-TTTCAAGGGAAACAATA
* * * * *
113207 TCAGA-ATTTGTGTTTCGAAGAAAATACTGTTTCAAGTGAGATGAAA-TTTGTTT-TGAGAAGA-
126 TCA-ATATTTATGTTTC-AAGAAAA-ACTGTCTCAAGAGAGA-CAAACTTTGTTTAAGAGAA-AC
** * * *
113268 ATCTCAAGTGAGA-TTAATTTTGTTTCAAGTGAAACAATTTCAA
186 ATCTCAAGTGAGACGAAACTTTGTTTCAAGAGAAACAATCTCAA
113311 AACTTGTATT
Statistics
Matches: 194, Mismatches: 29, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
277 27 0.14
278 77 0.40
279 20 0.10
280 20 0.10
281 25 0.13
282 22 0.11
283 3 0.02
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (274 bp):
GTTTCAAGAGAAACTGTCTCAAGAGAGACAAACTTGTTTTCAAGAGAAACTGTCTCAAGCGAGAC
AAAATTTTATTTCGAGAGAAACAATCTCAAACGAGATAATTTTTTTCAAGGGAAACAATATCAAT
ATTTATGTTTCAAGAAAAACTGTCTCAAGAGAGACAAACTTTGTTTAAGAGAAACATCTCAAGTG
AGACGAAACTTTGTTTCAAGAGAAACAATCTCAATTGTTTATGTTTCAAGAGAAACTGTCTCAAG
AGAGACAAAACTTT
Found at i:113447 original size:37 final size:36
Alignment explanation
Indices: 113396--113531 Score: 123
Period size: 37 Copynumber: 3.7 Consensus size: 36
113386 TAATGAAGAC
*
113396 TGTCTCAAGTGAGACGAAATTTGTTTTTAAGAAAAA
1 TGTCTCAAGCGAGACGAAATTTGTTTTTAAGAAAAA
* * *
113432 TTGTCTCATGCGAGACAAAATTTGTTTTTTAGAAAACA
1 -TGTCTCAAGCGAGACGAAATTTGTTTTTAAGAAAA-A
* * ** * *
113470 -ATCTCAAGTGAGATTAATTTTG-TTTCAAGAAAAAA
1 TGTCTCAAGCGAGACGAAATTTGTTTTTAAG-AAAAA
*
113505 TGTCTCTAGCGAGACGAAACTTTGTTT
1 TGTCTCAAGCGAGACGAAA-TTTGTTT
113532 CGAGAGAAAC
Statistics
Matches: 76, Mismatches: 18, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
35 6 0.08
36 32 0.42
37 35 0.46
38 3 0.04
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (36 bp):
TGTCTCAAGCGAGACGAAATTTGTTTTTAAGAAAAA
Found at i:113493 original size:73 final size:73
Alignment explanation
Indices: 113398--113549 Score: 184
Period size: 73 Copynumber: 2.1 Consensus size: 73
113388 ATGAAGACTG
* * *
113398 TCTCAAGTGAGACGAAATTTGTTTTTAAGAAAAATTGTCTC-ATGCGAGAC-AAAATTTGTTTTT
1 TCTCAAGTGAGACGAAATTTG-TTTCAAGAAAAAATGTCTCTA-GCGAGACGAAAATTTG-TTTC
*
113461 TAGA-AAACAA
63 GAGAGAAACAA
** * *
113471 TCTCAAGTGAGATTAATTTTGTTTCAAGAAAAAATGTCTCTAGCGAGACGAAACTTTGTTTCGAG
1 TCTCAAGTGAGACGAAATTTGTTTCAAGAAAAAATGTCTCTAGCGAGACGAAAATTTGTTTCGAG
113536 AGAAACAA
66 AGAAACAA
113544 TCTCAA
1 TCTCAA
113550 AGGCAACAGA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
72 30 0.44
73 38 0.56
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (73 bp):
TCTCAAGTGAGACGAAATTTGTTTCAAGAAAAAATGTCTCTAGCGAGACGAAAATTTGTTTCGAG
AGAAACAA
Found at i:119324 original size:2 final size:2
Alignment explanation
Indices: 119317--119354 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
119307 AAGTCAGGTC
119317 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119355 TGAGTAATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:123606 original size:18 final size:18
Alignment explanation
Indices: 123583--123618 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
123573 TGTTTTGAAA
123583 AAGACTATTGATCTTATT
1 AAGACTATTGATCTTATT
123601 AAGACTATTGATCTTATT
1 AAGACTATTGATCTTATT
123619 TAGAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (18 bp):
AAGACTATTGATCTTATT
Found at i:126024 original size:18 final size:18
Alignment explanation
Indices: 126001--126073 Score: 101
Period size: 18 Copynumber: 3.9 Consensus size: 18
125991 AGGGATTATC
*
126001 AGTGGTCCTTCGAGACAT
1 AGTGGTCCTTCGGGACAT
* *
126019 AGTGGTTCTTCGGAACAAT
1 AGTGGTCCTTCGGGAC-AT
126038 CAGTGGTCCTTCGGGACAT
1 -AGTGGTCCTTCGGGACAT
126057 AGTGGTCCTTCGGGACA
1 AGTGGTCCTTCGGGACA
126074 AATATTCAGT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
18 30 0.62
19 4 0.08
20 14 0.29
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:126049 original size:38 final size:38
Alignment explanation
Indices: 125998--126074 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
125988 TCGAGGGATT
*
125998 ATCAGTGGTCCTTCGAGACATAGTGGTTCTTCGGAACA
1 ATCAGTGGTCCTTCGAGACATAGTGGTCCTTCGGAACA
* *
126036 ATCAGTGGTCCTTCGGGACATAGTGGTCCTTCGGGACA
1 ATCAGTGGTCCTTCGAGACATAGTGGTCCTTCGGAACA
126074 A
1 A
126075 ATATTCAGTG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (38 bp):
ATCAGTGGTCCTTCGAGACATAGTGGTCCTTCGGAACA
Found at i:130775 original size:15 final size:15
Alignment explanation
Indices: 130755--130789 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
130745 CCGTAGGACC
130755 ACTACGTCCCGAAGG
1 ACTACGTCCCGAAGG
130770 ACTACGTCCCGAAGG
1 ACTACGTCCCGAAGG
130785 ACTAC
1 ACTAC
130790 AGAACCCTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.34, G:0.23, T:0.14
Consensus pattern (15 bp):
ACTACGTCCCGAAGG
Done.