Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001326.1 Hibiscus syriacus cultivar Beakdansim tig00002585_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66269

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4146--4226
23
3.6
22
78
11
94
24
27
24
23
2.00
4142--4248
43
2.4
44
74
9
110
27
28
23
21
1.99
6342--6366
13
1.9
13
100
0
50
40
0
16
44
1.47
6910--7069
65
2.5
66
86
9
206
30
23
18
27
1.98
6910--7089
65
2.8
64
80
16
194
29
23
18
27
1.98
11061--11125
13
5.0
13
76
12
62
40
12
1
46
1.51
13489--13580
35
2.7
34
85
8
116
32
7
19
40
1.80
13516--13634
35
3.3
36
89
5
179
31
5
19
43
1.72
18111--18176
21
3.5
21
67
26
65
28
4
19
46
1.69
18104--18221
35
3.3
37
87
8
163
32
3
19
44
1.67
29362--29430
30
2.3
29
77
5
75
40
8
7
43
1.63
29729--29774
14
3.4
14
70
11
51
15
0
34
50
1.44
29700--29745
21
2.2
21
88
7
67
21
0
30
47
1.51
30848--30953
15
6.3
15
73
20
70
0
42
0
57
0.98
30848--30953
48
2.1
53
87
8
159
0
42
0
57
0.98
30858--30968
33
3.3
33
75
12
100
0
41
0
57
1.05
30895--30983
15
5.8
14
73
15
52
0
35
3
60
1.13
30846--30968
30
4.2
29
74
13
103
0
42
0
56
1.04
30847--30986
48
2.9
48
80
9
144
0
40
2
57
1.11
32097--32173
29
2.7
29
95
0
136
24
27
33
14
1.94
32853--32886
15
2.2
15
89
5
50
38
0
2
58
1.13
32869--32937
23
3.0
23
76
0
66
42
1
1
55
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32818--32932
61
1.9
61
80
7
135
40
2
3
53
1.32
33044--33084
20
2.0
21
90
4
66
51
0
0
48
1.00
33886--33963
31
2.5
30
78
14
77
48
11
2
37
1.53
38995--39053
23
2.6
22
78
5
64
10
16
10
62
1.53
38995--39043
22
2.2
22
85
3
62
12
18
10
59
1.60
41151--41212
21
3.0
21
86
6
74
17
24
40
17
1.91
41151--41208
20
2.9
19
76
19
55
18
24
39
17
1.92
42686--42733
19
2.5
20
82
3
62
31
10
6
52
1.60
43944--43995
21
2.5
21
93
0
95
26
28
25
19
1.98
44030--44073
22
2.0
22
86
8
63
18
27
38
15
1.91
46868--51371
642
7.0
642
97
0
8373
23
14
20
41
1.89
55545--55574
15
2.0
15
93
0
51
33
10
6
50
1.62
55781--55849
28
2.4
30
81
9
83
56
1
10
31
1.41
58768--58825
17
3.4
17
71
4
53
46
6
20
25
1.75
63607--63651
19
2.3
19
84
3
54
55
6
13
24
1.62
65008--65057
20
2.5
20
83
0
73
30
16
20
34
1.94

Tables:   1

The End!