Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001327.1 Hibiscus syriacus cultivar Beakdansim tig00002589_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69566

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
432--463
16
2.0
16
93
0
55
28
6
34
31
1.82
2286--2450
86
1.9
85
85
6
226
45
7
9
38
1.64
9007--9043
19
1.9
19
89
10
58
48
2
0
48
1.15
9001--9174
90
2.0
89
88
4
264
44
6
10
37
1.65
11713--11740
14
2.0
14
100
0
56
14
28
7
50
1.69
12379--13816
165
8.7
165
85
2
1750
31
23
19
25
1.98
12381--13816
329
4.4
329
89
1
2058
31
23
19
25
1.98
12381--13817
494
2.9
491
83
3
1816
31
23
19
25
1.98
17110--17176
26
2.5
26
92
2
107
49
10
14
25
1.76
21666--21724
24
2.6
23
81
7
75
67
1
5
25
1.20
21667--21732
24
2.8
24
81
6
64
68
1
6
24
1.21
22840--23502
105
6.3
105
88
4
892
22
17
25
33
1.96
22840--23502
317
2.1
312
87
4
929
22
17
25
33
1.96
24178--24418
36
6.9
35
75
15
185
41
14
18
24
1.88
24316--24452
36
3.8
36
82
6
127
40
16
20
22
1.91
25324--25374
22
2.3
22
93
0
84
23
11
29
35
1.90
25983--26068
34
2.6
33
83
10
104
3
15
4
76
1.08
26001--26068
20
3.8
20
72
20
60
1
17
4
76
1.03
26020--26068
16
3.1
16
76
5
55
0
20
4
75
0.96
26018--26056
8
4.9
8
83
0
51
0
17
2
79
0.84
33030--33411
102
3.8
101
79
4
396
39
10
11
38
1.76
33817--33863
22
2.0
24
84
8
62
29
2
14
53
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34365--34391
6
4.5
6
100
0
54
29
18
0
51
1.46
44330--44367
20
1.9
20
94
0
67
50
0
2
47
1.15
47438--47471
13
2.6
13
100
0
68
32
0
38
29
1.58
52611--52825
7
30.7
7
99
0
414
0
42
0
57
1.02
66114--66171
25
2.3
25
82
5
64
56
0
6
36
1.26
68503--68553
25
2.0
25
100
0
102
33
3
19
43
1.70

Tables:   1

The End!