Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001328.1 Hibiscus syriacus cultivar Beakdansim tig00002593_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68922

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1217--1263
8
6.0
8
76
14
53
14
2
0
82
0.75
1205--1275
22
3.2
22
89
0
106
19
2
1
76
0.99
1239--1272
17
2.0
17
88
0
50
14
0
2
82
0.79
1217--1288
31
2.2
32
83
13
87
19
1
1
77
0.91
3371--3395
13
1.9
13
100
0
50
16
0
12
72
1.13
5233--5855
240
2.6
240
88
3
875
33
22
17
26
1.96
5760--6107
124
2.8
124
89
0
527
31
26
17
24
1.97
6158--6590
84
5.2
84
85
2
593
32
24
18
24
1.97
6158--6590
167
2.6
168
91
0
688
32
24
18
24
1.97
6158--6724
84
6.7
84
81
4
590
34
23
18
23
1.96
6158--6659
167
3.0
167
86
3
679
33
24
18
23
1.97
7056--7105
3
17.0
3
80
12
59
30
0
2
68
1.01
7056--7107
19
2.7
20
88
5
72
32
0
1
65
1.04
9079--9105
12
2.2
12
100
0
54
37
7
0
55
1.28
10013--10056
23
1.9
23
85
0
61
47
0
4
47
1.22
10015--10268
142
1.8
140
90
5
413
49
6
7
36
1.56
10434--10490
16
3.2
16
73
20
51
68
3
1
26
1.15
11751--11797
3
15.7
3
86
8
60
61
0
0
38
0.96
12504--12679
74
2.4
74
93
0
289
31
20
18
29
1.97
13369--13410
22
1.9
22
90
0
66
40
9
11
38
1.75
14436--14479
15
2.9
16
86
13
74
11
11
0
77
1.00
14437--14480
8
5.8
8
80
20
58
11
11
0
77
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14438--14470
7
4.7
7
85
14
50
12
12
0
75
1.04
21739--21770
16
2.1
16
88
11
50
31
3
12
53
1.54
21817--21848
15
2.1
15
100
0
64
50
6
18
25
1.70
25123--25201
26
3.0
26
80
14
76
64
1
3
30
1.19
25121--25185
24
2.7
24
77
15
71
64
1
3
30
1.18
25123--25201
28
3.0
26
82
10
74
64
1
3
30
1.19
26081--26125
22
2.1
21
84
12
56
64
4
2
28
1.25
27419--27463
3
15.0
3
86
9
56
62
0
0
37
0.96
27401--27460
24
2.5
24
83
0
66
56
0
0
43
0.99
27401--27463
18
3.7
18
79
12
78
57
0
0
42
0.99
29529--29554
2
13.0
2
100
0
52
50
0
0
50
1.00
29684--29733
2
25.0
2
100
0
100
50
0
0
50
1.00
30308--30350
2
21.5
2
100
0
86
48
0
0
51
1.00
36809--36865
27
2.1
27
87
6
80
31
10
10
47
1.72
41024--41065
19
2.2
19
91
8
68
30
0
28
40
1.57
41161--41205
13
3.4
13
80
17
56
44
8
0
46
1.34
42576--42686
2
57.0
2
73
21
94
49
2
3
44
1.34
42803--42895
29
3.2
29
72
14
84
44
5
6
44
1.52
42707--42975
128
2.1
128
80
11
299
44
8
5
41
1.57
42945--43009
34
1.9
34
81
12
80
44
9
4
41
1.57
48866--48907
15
2.8
15
82
10
50
23
2
2
71
1.10
62261--62349
24
3.7
24
92
0
142
25
19
21
33
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63204--63255
25
2.0
25
81
3
59
44
3
1
50
1.31
67732--67920
55
3.4
57
85
9
282
33
20
13
33
1.91

Tables:   1

The End!