genome.fa.s1329.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001329.1 Hibiscus syriacus cultivar Beakdansim tig00002595_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56686

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1547--1655	49	2.2	48	85	12	150	28	8	24	38	1.84
2338--2484	39	3.8	40	76	12	135	29	19	17	34	1.94
2338--2484	78	1.9	78	88	2	224	29	19	17	34	1.94
2283--2530	40	6.2	40	73	9	166	30	18	15	35	1.92
2335--2519	78	2.4	77	83	5	194	30	19	16	32	1.94
4671--4985	41	7.8	41	80	5	320	27	19	17	36	1.94
4671--4957	81	3.6	81	80	6	323	28	19	17	34	1.94
6797--6854	21	2.8	21	91	0	89	20	8	22	48	1.77
7404--7443	20	2.0	20	86	13	57	72	0	7	20	1.08
9512--9660	66	2.2	68	85	4	196	37	11	21	29	1.88
9616--9726	30	3.4	32	90	6	154	33	9	19	36	1.85
9769--10287	37	15.4	36	67	20	186	38	12	19	30	1.88
9945--10019	35	2.1	36	85	7	100	42	14	20	22	1.88
9843--10185	100	3.5	99	87	5	461	37	12	18	31	1.88
10072--10251	66	2.8	65	90	5	276	35	12	21	31	1.90
9971--10354	166	2.3	166	90	4	603	35	12	20	31	1.89
10135--10375	103	2.3	105	88	4	348	36	12	20	30	1.90
11572--11921	183	1.9	183	95	0	637	30	21	20	28	1.98
15875--15925	21	2.4	21	84	12	61	68	1	7	21	1.25
16095--16127	2	16.5	2	100	0	66	51	0	0	48	1.00
17450--17527	26	3.1	26	65	17	65	33	15	1	50	1.52
19309--19340	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21726--21825	44	2.2	45	82	1	121	31	20	18	31	1.96
23286--23334	20	2.5	20	83	9	73	57	10	16	16	1.65
23076--23548	181	2.6	182	88	1	680	42	13	16	26	1.86
23469--23515	20	2.4	19	79	10	58	53	8	17	21	1.70
25747--25811	21	3.1	21	81	0	76	38	15	30	15	1.88
27701--27749	19	2.6	19	90	0	71	32	2	10	55	1.45
27867--28835	198	4.9	199	96	1	1750	37	15	16	31	1.89
28796--28847	21	2.3	23	70	12	54	38	9	13	38	1.77
30957--30993	19	1.9	19	88	0	56	29	13	8	48	1.71
31326--31816	182	2.7	182	93	1	842	34	14	17	34	1.90
34262--34325	24	2.6	25	77	2	76	34	9	14	42	1.77
34602--34648	21	2.2	22	81	11	62	40	12	10	36	1.78
34666--34742	23	3.5	22	84	7	93	33	3	22	40	1.72
35157--35193	18	2.1	18	89	0	56	32	5	10	51	1.60
35149--35195	24	2.0	24	86	0	67	34	4	14	46	1.64
35451--35536	39	2.2	39	95	0	154	48	17	13	19	1.80
35951--36023	23	3.2	23	88	0	101	34	4	21	39	1.73
36379--36451	23	3.2	23	88	0	101	34	4	21	39	1.73
36803--36875	23	3.2	23	86	0	92	35	4	20	39	1.72
35751--38493	424	6.5	427	96	1	5022	41	7	12	38	1.71
37228--37300	23	3.2	23	88	0	101	34	4	21	39	1.73
37656--37728	23	3.2	23	88	0	101	34	4	21	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35751--38493	853	3.2	851	96	1	5028	41	7	12	38	1.71
38076--38148	23	3.2	23	84	0	92	35	4	20	39	1.72
40707--40737	13	2.4	13	100	0	62	19	9	22	48	1.78
41341--41630	37	7.9	35	74	12	226	40	5	5	47	1.52
41341--41581	72	3.3	71	78	12	231	41	4	5	48	1.48
42214--42244	2	15.5	2	100	0	62	51	0	0	48	1.00
48236--48310	36	2.1	36	82	9	91	46	1	4	48	1.29
56350--56490	43	3.2	43	80	9	140	39	8	14	36	1.77
56350--56490	46	3.2	44	80	10	144	39	8	14	36	1.77

Tables:   1

The End!