genome.fa.s133.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000133.1 Hibiscus syriacus cultivar Beakdansim tig00000239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84036

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1932--1989	22	2.6	22	73	15	66	41	0	0	58	0.98
2106--2240	50	2.6	52	78	18	158	43	2	2	51	1.26
2284--2329	21	2.1	23	88	8	69	52	0	2	45	1.13
2277--2337	29	2.1	29	81	6	70	49	0	1	49	1.10
3499--3999	46	11.0	46	87	1	686	20	21	13	44	1.86
3781--3818	19	2.0	20	89	5	60	15	28	13	42	1.85
4359--4529	92	1.8	93	87	6	258	24	23	13	38	1.91
10640--11117	46	10.6	46	84	5	595	21	21	12	44	1.85
10640--11117	90	5.3	92	85	5	595	21	21	12	44	1.85
10608--11117	227	2.3	222	84	4	632	21	21	12	44	1.85
10983--11019	19	1.9	19	88	0	56	16	29	8	45	1.76
11493--11533	18	2.3	18	91	0	64	26	31	7	34	1.84
14527--14552	13	2.0	13	100	0	52	46	15	0	38	1.46
15247--15294	17	2.8	17	80	0	60	20	29	18	31	1.97
16891--16966	32	2.4	31	82	4	98	11	18	34	35	1.87
25403--25454	21	2.6	19	85	14	77	57	11	11	19	1.63
25414--25456	21	2.0	21	100	0	86	53	13	13	18	1.73
26868--26916	18	2.7	18	87	0	71	28	30	22	18	1.97
26940--26981	19	2.2	19	86	4	57	9	16	47	26	1.77
29157--29181	13	1.9	13	100	0	50	24	16	28	32	1.96
29756--30252	131	3.8	131	88	1	685	31	12	16	39	1.85
29756--30252	260	1.9	261	85	1	683	31	12	16	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34962--35032	31	2.3	31	82	0	79	26	5	16	50	1.67
39483--39537	24	2.3	24	83	0	65	20	12	16	50	1.77
39534--39567	7	4.9	7	92	0	59	44	0	11	44	1.40
40518--40567	14	3.7	14	81	10	68	46	8	2	44	1.44
41253--41299	16	2.9	16	87	0	67	19	23	17	40	1.91
41454--41540	43	2.0	43	95	0	156	55	21	2	20	1.55
41445--41532	24	3.9	24	70	19	80	53	25	2	19	1.57
47982--48036	22	2.5	22	88	8	76	41	21	12	23	1.88
48059--48109	13	3.8	13	77	10	50	23	21	25	29	1.99
57742--57797	24	2.3	24	84	6	69	8	16	28	46	1.77
57752--57804	14	4.1	14	81	18	78	7	15	26	50	1.70
57753--57814	24	2.6	24	94	0	106	9	12	24	53	1.69
58904--58970	16	4.3	16	88	3	93	10	10	20	58	1.61
58902--58962	32	1.9	32	93	0	104	8	13	24	54	1.66
59032--59064	16	2.1	16	100	0	66	6	12	24	57	1.57
66192--66249	30	1.9	30	85	0	80	24	17	22	36	1.95
66400--66465	2	33.0	2	96	0	123	48	0	1	50	1.10
68628--68679	27	1.9	26	81	14	61	40	5	19	34	1.75
70976--71008	2	16.5	2	100	0	66	48	0	0	51	1.00
72210--72256	19	2.5	19	96	0	85	44	2	14	38	1.58
74759--74862	2	52.0	2	100	0	208	50	0	0	50	1.00
75228--75317	32	2.9	31	86	4	128	24	18	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78778--78835	30	1.9	30	86	6	82	75	0	22	1	0.89
78793--78835	15	2.9	14	90	10	68	74	0	25	0	0.82
78767--78823	12	4.7	12	74	10	53	73	0	21	5	1.02
81095--81198	41	2.5	42	80	1	120	28	19	21	30	1.97
82064--82110	19	2.5	19	100	0	94	23	17	34	25	1.96
83516--83652	61	2.2	61	85	2	177	40	8	11	39	1.71

Tables:   1

The End!