Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001330.1 Hibiscus syriacus cultivar Beakdansim tig00002596_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 140566
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:3066 original size:27 final size:27
Alignment explanation
Indices: 3028--3118 Score: 168
Period size: 27 Copynumber: 3.4 Consensus size: 27
3018 CCTCTCATCC
3028 TAAAAAATGAAAATGAGAAAATATATA
1 TAAAAAATGAAAATGAGAAAATATATA
3055 TAAAAAATGAAAATGAGAAAATATATA
1 TAAAAAATGAAAATGAGAAAATATATA
3082 TAAAAAATGAAAATGAGAAAA-ATATA
1 TAAAAAATGAAAATGAGAAAATATATA
3108 T-AAAAATGAAA
1 TAAAAAATGAAA
3119 GGAAACAATT
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
25 10 0.16
26 6 0.09
27 48 0.75
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (27 bp):
TAAAAAATGAAAATGAGAAAATATATA
Found at i:3425 original size:31 final size:31
Alignment explanation
Indices: 3350--3416 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
3340 ATGATGGTAG
* * * *
3350 AGTGAACATTTTGTGATAAATCGGTAATGTT
1 AGTGACCATTTTGTTACAAATCGATAATGTT
3381 AGTGACCATTTTGTTACAAATCGATAATGTT
1 AGTGACCATTTTGTTACAAATCGATAATGTT
3412 AGTGA
1 AGTGA
3417 TGTATTTGTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (31 bp):
AGTGACCATTTTGTTACAAATCGATAATGTT
Found at i:4758 original size:24 final size:24
Alignment explanation
Indices: 4731--4778 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
4721 GGCTCGATTT
*
4731 TCTTCCAACAGTCAGACCTTTTAA
1 TCTTCCAACAGTCAAACCTTTTAA
4755 TCTTCCAACAGTCAAACCTTTTAA
1 TCTTCCAACAGTCAAACCTTTTAA
4779 ATTCCAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.33
Consensus pattern (24 bp):
TCTTCCAACAGTCAAACCTTTTAA
Found at i:5301 original size:28 final size:28
Alignment explanation
Indices: 5246--5298 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
5236 ATCCGCTTCA
* *
5246 TTGTTAAGGTGATCTGCTTACTTGTTAT
1 TTGTTAAGGTAATCTGCTTAATTGTTAT
5274 TTGTTAAGGTAATCTG-TTAATTGTT
1 TTGTTAAGGTAATCTGCTTAATTGTT
5299 TATCTATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.21, C:0.08, G:0.21, T:0.51
Consensus pattern (28 bp):
TTGTTAAGGTAATCTGCTTAATTGTTAT
Found at i:5333 original size:20 final size:20
Alignment explanation
Indices: 5274--5335 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 20
5264 TACTTGTTAT
5274 TTGTTAAGGTAATCTG-TTAA
1 TTGTT-AGGTAATCTGTTTAA
** *
5294 TTGTTTATCTATAATATGTTTAA
1 TTG-TTA--GGTAATCTGTTTAA
5317 TTGTTAGGTAATCTGTTTA
1 TTGTTAGGTAATCTGTTTA
5336 GAATTTAGAT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
20 14 0.44
21 2 0.06
22 9 0.28
23 7 0.22
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.52
Consensus pattern (20 bp):
TTGTTAGGTAATCTGTTTAA
Found at i:9156 original size:50 final size:50
Alignment explanation
Indices: 9098--9348 Score: 367
Period size: 50 Copynumber: 5.0 Consensus size: 50
9088 TTTCACGTAG
* * * *
9098 AGATGTTACACTTTCATAGAAATTCCTCAACTCATTTCCACCAATCATGT
1 AGATGTTACACTTTTATACAAATCCCTCTACTCATTTCCACCAATCATGT
*
9148 AGATGTTACACTTTTATACGAATCCCTCTACTCATTTCCACCAATCATGT
1 AGATGTTACACTTTTATACAAATCCCTCTACTCATTTCCACCAATCATGT
*
9198 AGATGTTACACTTTTATACATATCCCTCTACTCATTTCCACCAATCATGT
1 AGATGTTACACTTTTATACAAATCCCTCTACTCATTTCCACCAATCATGT
* * *
9248 AGATGTTACACTCTTATACAAATCCCTCTACTCTTTTCTACCAATCATGT
1 AGATGTTACACTTTTATACAAATCCCTCTACTCATTTCCACCAATCATGT
* * * * **
9298 AGATGTTACACTCTTATAAAAACCCCTCTACTCTTTTCTGCCAATCATGT
1 AGATGTTACACTTTTATACAAATCCCTCTACTCATTTCCACCAATCATGT
9348 A
1 A
9349 ACAGTAAATT
Statistics
Matches: 187, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 187 1.00
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.36
Consensus pattern (50 bp):
AGATGTTACACTTTTATACAAATCCCTCTACTCATTTCCACCAATCATGT
Found at i:19606 original size:17 final size:18
Alignment explanation
Indices: 19584--19690 Score: 62
Period size: 17 Copynumber: 5.8 Consensus size: 18
19574 CAAAGAGGTT
19584 TTATATTTAATTTT-ATA
1 TTATATTTAATTTTAATA
*
19601 TTATATTTGATTTTAATA
1 TTATATTTAATTTTAATA
*
19619 TTA-ATTT--TTTAAATAAA
1 TTATATTTAATTTTAAT--A
*
19636 TTAAATATTAATTTTTTAATA
1 TTATAT-TTAA--TTTTAATA
* *
19657 TTATATTATAGATATTAATT
1 TTATATT-TA-ATTTTAATA
19677 TTA-ATATTAATTTT
1 TTATAT-TTAATTTT
19691 TTAAATAAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 23
0.70 0.07 0.23
Matches are distributed among these distances:
15 6 0.08
17 21 0.30
18 12 0.17
19 6 0.08
20 11 0.15
21 8 0.11
22 1 0.01
23 6 0.08
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
TTATATTTAATTTTAATA
Found at i:19664 original size:26 final size:27
Alignment explanation
Indices: 19614--19686 Score: 93
Period size: 26 Copynumber: 2.9 Consensus size: 27
19604 TATTTGATTT
19614 TAATATTAATTTTTTAA-A-TAAATTA
1 TAATATTAATTTTTTAATATTAAATTA
*
19639 -AATATTAATTTTTTAATATTATATTA
1 TAATATTAATTTTTTAATATTAAATTA
19665 TAGATATTAA--TTTTAATATTAA
1 TA-ATATTAATTTTTTAATATTAA
19687 TTTTTTAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
24 16 0.38
25 1 0.02
26 17 0.40
27 1 0.02
28 7 0.17
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.53
Consensus pattern (27 bp):
TAATATTAATTTTTTAATATTAAATTA
Found at i:19689 original size:40 final size:37
Alignment explanation
Indices: 19639--19723 Score: 109
Period size: 38 Copynumber: 2.2 Consensus size: 37
19629 AAATAAATTA
*
19639 AATATTAATTTTTTAATATTATATTATAGATATTAA-TTTT
1 AATATTAATTTTTTAA-A-TAAATTA-A-ATATTAATTTTT
19679 AATATTAATTTTTTAAATAAATTAAATATTAATTTTTT
1 AATATTAATTTTTTAAATAAATTAAATATTAA-TTTTT
19717 AATATTA
1 AATATTA
19724 TATTATAGAT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
36 7 0.17
37 1 0.02
38 17 0.40
39 1 0.02
40 16 0.38
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (37 bp):
AATATTAATTTTTTAAATAAATTAAATATTAATTTTT
Found at i:19689 original size:64 final size:64
Alignment explanation
Indices: 19589--19744 Score: 264
Period size: 64 Copynumber: 2.5 Consensus size: 64
19579 AGGTTTTATA
* *
19589 TTTAATTTTATATTAT--AT-TTGATTTTAATATTAATTTTTTAAATAAATTAAATATTAATTT
1 TTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATTT
19650 TTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATTT
1 TTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATTT
19714 TTTAATATTATATTATAGATATTTAATTTTA
1 TTTAATATTATATTATAGATA-TTAATTTTA
19745 TATCATATAA
Statistics
Matches: 89, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
61 15 0.17
63 2 0.02
64 63 0.71
65 9 0.10
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (64 bp):
TTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATTT
Found at i:19799 original size:20 final size:19
Alignment explanation
Indices: 19739--19800 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
19729 TAGATATTTA
*
19739 ATTTTATATCA-TATAAATT
1 ATTTTATAT-ATTATTAATT
*
19758 ATTTTATATATTATTAA-A
1 ATTTTATATATTATTAATT
19776 ATTTTATAT-TTATTTTAATT
1 ATTTTATATATTA--TTAATT
19796 ATTTT
1 ATTTT
19801 GATTTAAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
17 3 0.08
18 10 0.28
19 18 0.50
20 5 0.14
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTATATATTATTAATT
Found at i:20301 original size:31 final size:31
Alignment explanation
Indices: 20263--20322 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
20253 TAGTTGTATG
*
20263 AATTATTTAAAT-TTCAGTATTGTAAAACTAA
1 AATTATTTAAATCTT-AGTATTGCAAAACTAA
20294 AATTATTTAAATCTTAGTATTGCAAAACT
1 AATTATTTAAATCTTAGTATTGCAAAACT
20323 CTTTTAAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 25 0.93
32 2 0.07
ACGTcount: A:0.43, C:0.08, G:0.07, T:0.42
Consensus pattern (31 bp):
AATTATTTAAATCTTAGTATTGCAAAACTAA
Found at i:24624 original size:12 final size:12
Alignment explanation
Indices: 24594--24637 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
24584 ATTACTTTTA
24594 TATTTTAATTAT
1 TATTTTAATTAT
**
24606 TGCTTTAATTAT
1 TATTTTAATTAT
24618 TATTTT-ATTAT
1 TATTTTAATTAT
*
24629 TATCTTAAT
1 TATTTTAAT
24638 CATATAAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 10 0.38
12 16 0.62
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (12 bp):
TATTTTAATTAT
Found at i:24652 original size:2 final size:2
Alignment explanation
Indices: 24639--24668 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
24629 TATCTTAATC
*
24639 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24669 TTTTAATAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:25502 original size:18 final size:16
Alignment explanation
Indices: 25475--25518 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
25465 TTTCTTTCAA
*
25475 ATTTTTTATTACTTATT
1 ATTTTTTATTA-TTAAT
25492 ATTTTTATATTATTAAT
1 ATTTTT-TATTATTAAT
25509 ATTTTTTATT
1 ATTTTTTATT
25519 TATGAAGGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 4 0.16
17 16 0.64
18 5 0.20
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.70
Consensus pattern (16 bp):
ATTTTTTATTATTAAT
Found at i:29789 original size:72 final size:72
Alignment explanation
Indices: 29655--29789 Score: 218
Period size: 72 Copynumber: 1.9 Consensus size: 72
29645 ATACAATAAA
* * * *
29655 GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATAGCCCTGGCTTTATGGATAATATTTAGCTAGT
1 GCTTGAGTTAGCCCCCTAAAGCAATTGGTTAATAGCCCCGGCTTTATGGATAATAGTCAGCTAGT
29720 CTGTTAT
66 CTGTTAT
29727 GCTTGAGTT-GCCCCTCTAAAGCAATTGGTTAATAGCCCCGGCTTTATGGATAATAGTCAGCTA
1 GCTTGAGTTAGCCCC-CTAAAGCAATTGGTTAATAGCCCCGGCTTTATGGATAATAGTCAGCTA
29790 ACCCATTATA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
71 4 0.07
72 54 0.93
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (72 bp):
GCTTGAGTTAGCCCCCTAAAGCAATTGGTTAATAGCCCCGGCTTTATGGATAATAGTCAGCTAGT
CTGTTAT
Found at i:31979 original size:114 final size:114
Alignment explanation
Indices: 31771--31996 Score: 371
Period size: 114 Copynumber: 2.0 Consensus size: 114
31761 AAGTGCCATG
*
31771 TGCTCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
* * * *
31836 TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTAAAAGATGAATT
66 TGATTCGGTAGGAACCCCAAAACCAATCATTGGAATTAAAAGATGAATT
*
31885 TGCTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
* * *
31950 TGATTCGGTAGGAACCCCAGAACCGATCATTGGAATTGAAAGATGAA
66 TGATTCGGTAGGAACCCCAAAACCAATCATTGGAATTAAAAGATGAA
31997 CTGCATGATC
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 103 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (114 bp):
TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
TGATTCGGTAGGAACCCCAAAACCAATCATTGGAATTAAAAGATGAATT
Found at i:34095 original size:50 final size:50
Alignment explanation
Indices: 34033--34162 Score: 199
Period size: 50 Copynumber: 2.6 Consensus size: 50
34023 AATCCAAGAA
*
34033 AAATGATGAATATGTTGTCAACTGTTTTACATCCAAGCAGAAGCCACAGG
1 AAATGATGAATATGTTGTCAACTGTTTTACATCCAAACAGAAGCCACAGG
* *
34083 GAATGATGAATATGTTGTCAAATGTTTTACATCCAAACAGAAGCCACAGG
1 AAATGATGAATATGTTGTCAACTGTTTTACATCCAAACAGAAGCCACAGG
* *
34133 AAATGATGAATGTGTTATCAAAC-GTTTTAC
1 AAATGATGAATATGTTGTC-AACTGTTTTAC
34163 GAACCAGTGA
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
50 70 0.97
51 2 0.03
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.28
Consensus pattern (50 bp):
AAATGATGAATATGTTGTCAACTGTTTTACATCCAAACAGAAGCCACAGG
Found at i:34565 original size:22 final size:22
Alignment explanation
Indices: 34534--34586 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
34524 ATCTATACTC
*
34534 TTCAAAGATGATAGATTCCCTT
1 TTCAAAGATGACAGATTCCCTT
* *
34556 TTTAAAGATGACAGATTCTCTT
1 TTCAAAGATGACAGATTCCCTT
34578 TTCAAAGAT
1 TTCAAAGAT
34587 AAAAGCTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (22 bp):
TTCAAAGATGACAGATTCCCTT
Found at i:35398 original size:113 final size:112
Alignment explanation
Indices: 34996--36569 Score: 2282
Period size: 113 Copynumber: 13.9 Consensus size: 112
34986 GATTCAAATC
* * *
34996 CATCATTCAATAGATCAACATTTCC-GGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACATTACCAGGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
35060 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCGCTTGAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTT-GCTTGAATT
* *
35108 CATTATTCGATGGATCAACATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAA
1 CATCATTCGATGGATCAACATTACCAGGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * *
35173 AGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTTGCTTAAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACC-TTTTGCTTGAATT
* * * *
35222 CATCATTCAATGGATCATCATTGCCAGGTCAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACATTACCAGG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
35287 AGAAGAAGTTCATAATGAGAAGAACTTATTCAACCTTTTGCTCGAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATT
* *
35335 CATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACATTACCAG-GAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
*
35400 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCACTTGAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTT-GCTTGAATT
* *
35448 CATTATTCGATGGATCAACATTACCCGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACATTACCAGGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
*
35513 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCACTTGAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTT-GCTTGAATT
*
35561 CATTATTCGATGGATCAACATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACATTACCAGGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * *
35626 AGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTTGCTTAAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACC-TTTTGCTTGAATT
* * * *
35675 CATCATTCAATGGATCATCATTGCCAGGTCAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACATTACCAGG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
35740 AGAAGAAGTTCATAATGAGAAGAACTTATTCAACCTTTTGCTCGAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATT
* *
35788 CATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACATTACCAG-GAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
35853 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCGCTTGAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTT-GCTTGAATT
*
35901 CATTATTCGATGGATCAACATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACATTACCAGGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
35966 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCGCTTGAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTT-GCTTGAATT
* *
36014 CATTATTCGATGGATCAAAATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACATTACCAGGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * *
36079 AGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTTGCTTAAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACC-TTTTGCTTGAATT
* * * * *
36128 CATCATTCAATGGATCATCATTGCCAGGTCAAGTTCATAATGAGAAGAACTCATCTGAAAAAGGA
1 CATCATTCGATGGATCAACATTACCAGG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * *
36193 AGAAGAAGTTCATAATGAGAAGAGCTTATTCAACCTTTTGCTCGAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATT
* *
36241 CATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACATTACCAG-GAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * *
36306 AGAATAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTTAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATT
* * * * * *
36354 CATCA-CCTAATGGATTAGCATTGCCAGAGAAAGTTCATAATGAGAAGAACTCATATGAAGAAGG
1 CATCATTC-GATGGATCAACATTACCAG-GAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* * *
36418 AAGAAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCCTGAATT
64 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATT
* * * *
36467 CATCACTT-GATGGATTAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATATGAAGAAGG
1 CATCA-TTCGATGGATCAACATTACCAG-GAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* *
36531 AAGAAGAAGTTCATAATGAGAAGAGCTTGTCCAACCTTT
64 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTT
36570 GTTTGATGCT
Statistics
Matches: 1338, Mismatches: 104, Indels: 39
0.90 0.07 0.03
Matches are distributed among these distances:
112 38 0.03
113 990 0.74
114 295 0.22
115 15 0.01
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (112 bp):
CATCATTCGATGGATCAACATTACCAGGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
GAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATT
Found at i:35668 original size:340 final size:337
Alignment explanation
Indices: 34996--36565 Score: 2303
Period size: 340 Copynumber: 4.6 Consensus size: 337
34986 GATTCAAATC
* *
34996 CATCATTCAATAGATCAACATTTCC-GGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCAATGGATCAACATTGCCAGGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
*
35060 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCGCTTGAATTCATTATTCGATGGATC
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCGCTTGAATTCATCATTCGATGGATC
*
35124 AACATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCATAAT
130 AACATTACCAGGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* * * * * * * *
35189 AAGAAGAATTTGTTCAACCTTTTTGCTTAAATTCATCATTCAATGGATCATCATTGCCAGGTCAA
194 GAGAAGAACTTGTTCAA-CTTTTCGCTTGAATTCATCATTCGATGGATCAACATTACCAGG-AAA
*
35254 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTCA
257 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
*
35319 ACCTTTTGCTCGAATT
322 ACCTTTTGCTTGAATT
* * *
35335 CATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCAATGGATCAACATTGCCAG-GAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
35400 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCACTTGAATTCATTATTCGATGGATC
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCGCTTGAATTCATCATTCGATGGATC
*
35464 AACATTACCCGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
130 AACATTACCAGGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* *
35529 GAGAAGAACTTGTTCAACTTTTCACTTGAATTCATTATTCGATGGATCAACATTACCAGGAAGAG
194 GAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATGGATCAACATTACCAGGAA-AG
* *
35594 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAA
258 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
*
35659 CCTTTTTGCTTAAATT
323 CC-TTTTGCTTGAATT
* *
35675 CATCATTCAATGGATCATCATTGCCAGGTCAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCAATGGATCAACATTGCCAGG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
35740 AGAAGAAGTTCATAATGAGAAGAACTTATTCAACCTTTT-GCTCGAATTCATCATTCGATGGATC
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCGCTTGAATTCATCATTCGATGGATC
* *
35804 AACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
130 AACATTACCAG-GAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
*
35869 GAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATTATTCGATGGATCAACATTACCAGGAAGAG
194 GAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATGGATCAACATTACCAGGAA-AG
35934 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
258 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
35999 -CTTTTCGCTTGAATT
323 CCTTTT-GCTTGAATT
* * * *
36014 CATTATTCGATGGATCAAAATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCAATGGATCAACATTGCCAGGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * * * *
36079 AGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTTGCTTAAATTCATCATTCAATGGATC
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCGCTTGAATTCATCATTCGATGGATC
* * * *
36144 ATCATTGCCAGGTCAAGTTCATAATGAGAAGAACTCATCTGAAAAAGGAAGAAGAAGTTCATAAT
130 AACATTACCAGG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* * * * *
36209 GAGAAGAGCTTATTCAACCTTTT-GCTCGAATTCATCATTCGATGGATCAACTTTTCCAGAGAAA
194 GAGAAGAACTTGTTCAA-CTTTTCGCTTGAATTCATCATTCGATGGATCAACATTACCAG-GAAA
* *
36273 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAATAAGTTCATAATGAGAAGAATTTGTTCA
257 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
*
36338 ACCTTTTGCTTTAATT
322 ACCTTTTGCTTGAATT
* * * *
36354 CATCA-CCTAATGGATTAGCATTGCCAGAGAAAGTTCATAATGAGAAGAACTCATATGAAGAAGG
1 CATCATTC-AATGGATCAACATTGCCAG-GAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* * *
36418 AAGAAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT-GCCTGAATTCATCACTT-GATGGA
64 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCGCTTGAATTCATCA-TTCGATGGA
* * * *
36481 TTAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATATGAAGAAGGAAGAAGAAGTTCATA
128 TCAACATTACCAG-GAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATA
* *
36546 ATGAGAAGAGCTTGTCCAAC
192 ATGAGAAGAACTTGTTCAAC
36566 CTTTGTTTGA
Statistics
Matches: 1128, Mismatches: 85, Indels: 37
0.90 0.07 0.03
Matches are distributed among these distances:
338 7 0.01
339 319 0.28
340 775 0.69
341 27 0.02
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (337 bp):
CATCATTCAATGGATCAACATTGCCAGGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
GAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCGCTTGAATTCATCATTCGATGGATCA
ACATTACCAGGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
GAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATGGATCAACATTACCAGGAAAGTTC
ATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCT
TTTGCTTGAATT
Found at i:35865 original size:453 final size:453
Alignment explanation
Indices: 35008--36569 Score: 2751
Period size: 453 Copynumber: 3.5 Consensus size: 453
34998 TCATTCAATA
*
35008 GATCAACATTTCC-GGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
1 GATCAACATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
35072 TAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATTATTCGATGGATCAACATTACCAGGA
66 TAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATTATTCGATGGATCAACATTACCAGGA
*
35137 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCATAATAAGAAGAATTTGT
131 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGT
35202 TCAACCTTTTTGCTTAAATTCATCATTCAATGGATCATCATTGCCAGGTCAAGTTCATAATGAGA
196 TCAACCTTTTTGCTTAAATTCATCATTCAATGGATCATCATTGCCAGGTCAAGTTCATAATGAGA
35267 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTCAACCTTTTGCTCGA
261 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTCAACCTTTTGCTCGA
35332 ATTCATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA
326 ATTCATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA
*
35397 GGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCACTTGAATTCATTATTCGATG
391 GGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATTATTCGATG
*
35460 GATCAACATTACCCGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
1 GATCAACATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
*
35525 TAATGAGAAGAACTTGTTCAACTTTTCACTTGAATTCATTATTCGATGGATCAACATTACCAGGA
66 TAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATTATTCGATGGATCAACATTACCAGGA
35590 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGT
131 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGT
35655 TCAACCTTTTTGCTTAAATTCATCATTCAATGGATCATCATTGCCAGGTCAAGTTCATAATGAGA
196 TCAACCTTTTTGCTTAAATTCATCATTCAATGGATCATCATTGCCAGGTCAAGTTCATAATGAGA
35720 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTCAACCTTTTGCTCGA
261 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTCAACCTTTTGCTCGA
35785 ATTCATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA
326 ATTCATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA
35850 GGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATTATTCGATG
391 GGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATTATTCGATG
35913 GATCAACATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
1 GATCAACATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
*
35978 TAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATTATTCGATGGATCAAAATTACCAGGA
66 TAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATTATTCGATGGATCAACATTACCAGGA
36043 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGT
131 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGT
36108 TCAACCTTTTTGCTTAAATTCATCATTCAATGGATCATCATTGCCAGGTCAAGTTCATAATGAGA
196 TCAACCTTTTTGCTTAAATTCATCATTCAATGGATCATCATTGCCAGGTCAAGTTCATAATGAGA
* *
36173 AGAACTCATCTGAAAAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTATTCAACCTTTTGCTCGA
261 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTCAACCTTTTGCTCGA
36238 ATTCATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA
326 ATTCATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA
* * * * * *
36303 GGAAGAATAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT-GCTTTAATTCATCA-CCTAATG
391 GGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCGCTTGAATTCATTATTC-GATG
* * * * *
36366 GATTAGCATTGCCAGAGAA-AGTTCATAATGAGAAGAACTCATATGAAGAAGGAAGAAAAAGTTC
1 GATCAACATTACCAG-GAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTC
* * * * * *
36430 ATAATGAGAAGAATTTGTTCAACCTTTT-GCCTGAATTCATCACTT-GATGGATTAACTTTTCCA
65 ATAATGAGAAGAACTTGTTCAA-CTTTTCGCTTGAATTCATTA-TTCGATGGATCAACATTACCA
* * **
36493 GAGAA-AGTTCATAATGAGAAGAACTCATATGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGC
128 G-GAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAAT
*
36557 TTGTCCAACCTTT
192 TTGTTCAACCTTT
36570 GTTTGATGCT
Statistics
Matches: 1071, Mismatches: 32, Indels: 13
0.96 0.03 0.01
Matches are distributed among these distances:
452 13 0.01
453 1040 0.97
454 18 0.02
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (453 bp):
GATCAACATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
TAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATTATTCGATGGATCAACATTACCAGGA
AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGT
TCAACCTTTTTGCTTAAATTCATCATTCAATGGATCATCATTGCCAGGTCAAGTTCATAATGAGA
AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTCAACCTTTTGCTCGA
ATTCATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA
GGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATTATTCGATG
Found at i:38218 original size:12 final size:12
Alignment explanation
Indices: 38188--38231 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
38178 ATTACTTTTA
38188 TATTTTAATTAT
1 TATTTTAATTAT
**
38200 TGCTTTAATTAT
1 TATTTTAATTAT
38212 TATTTT-ATTAT
1 TATTTTAATTAT
*
38223 TATCTTAAT
1 TATTTTAAT
38232 CATATAAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 10 0.38
12 16 0.62
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (12 bp):
TATTTTAATTAT
Found at i:39486 original size:5 final size:5
Alignment explanation
Indices: 39476--39680 Score: 180
Period size: 5 Copynumber: 40.6 Consensus size: 5
39466 AGGACTCTTT
39476 TTATA TTATA -TAGTA TTATA TTATATA TTATA TTATA -TAT- TTATA
1 TTATA TTATA TTA-TA TTATA -T-TATA TTATA TTATA TTATA TTATA
*
39521 TTATACA TTATA -TAT- TACATA TTATA -TATA TATATA TTATA TTATA
1 TTAT--A TTATA TTATA T-TATA TTATA TTATA T-TATA TTATA TTATA
39567 TGT-TA -TATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1 T-TATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
* * *
39616 TTATG TTATA -TATTA TGAATA TTATA GTATTA TTATA TTATA TTATTA
1 TTATA TTATA TTA-TA T-TATA TTATA TTA-TA TTATA TTATA TTA-TA
39664 TTAGT- TTATA TT-TA TTA
1 TTA-TA TTATA TTATA TTA
39681 ATATGTTTTT
Statistics
Matches: 168, Mismatches: 9, Indels: 46
0.75 0.04 0.21
Matches are distributed among these distances:
3 1 0.01
4 24 0.14
5 109 0.65
6 24 0.14
7 10 0.06
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (5 bp):
TTATA
Found at i:39494 original size:10 final size:9
Alignment explanation
Indices: 39477--39684 Score: 135
Period size: 8 Copynumber: 23.3 Consensus size: 9
39467 GGACTCTTTT
39477 TATATTATA
1 TATATTATA
39486 TAGTATTATA
1 TA-TATTATA
39496 T-TA-TATA
1 TATATTATA
39503 TTATATTATA
1 -TATATTATA
39513 TAT-TTATA
1 TATATTATA
39521 TTATACATTATA
1 -TAT--ATTATA
*
39533 TAT-TACATA
1 TATAT-TATA
39542 TTATATATATA
1 -TATAT-TATA
39553 TATATTATA
1 TATATTATA
39562 TTATATGT-TA
1 -TATAT-TATA
39572 TATATTATA
1 TATATTATA
39581 T-TA-TAT-
1 TATATTATA
39587 TATATTATA
1 TATATTATA
39596 TTATATTATA
1 -TATATTATA
39606 TTATATTATA
1 -TATATTATA
39616 T-TATGT-TA
1 TATAT-TATA
39624 TATATTATGA
1 TATATTAT-A
39634 -ATATTATA
1 TATATTATA
*
39642 -GTATTAT-
1 TATATTATA
39649 TATATTATA
1 TATATTATA
39658 T-TATTAT-
1 TATATTATA
39665 TAGT-TTATA
1 TA-TATTATA
*
39674 TTTATTA-A
1 TATATTATA
39682 TAT
1 TAT
39685 GTTTTTTTTT
Statistics
Matches: 165, Mismatches: 6, Indels: 57
0.72 0.03 0.25
Matches are distributed among these distances:
6 1 0.01
7 10 0.06
8 49 0.30
9 44 0.27
10 47 0.28
11 9 0.05
12 5 0.03
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (9 bp):
TATATTATA
Found at i:39535 original size:34 final size:34
Alignment explanation
Indices: 39497--39684 Score: 155
Period size: 36 Copynumber: 5.6 Consensus size: 34
39487 AGTATTATAT
39497 TATATATTATATTATATAT-TTATATTATACATTA
1 TATATATTATATTATATATATTATATTATA-ATTA
*
39531 TATAT-TACATATTATATATATATATATTAT-A-T-
1 TATATAT-TATATTATATATAT-TATATTATAATTA
*
39563 TATATGTTATA-TAT-TATATTATATTAT-ATTA
1 TATATATTATATTATATATATTATATTATAATTA
*
39594 TATTATATTATATTATATTATATTATGTTATATATTA
1 TA-TATATTATATTATA-TATATTATATTATA-ATTA
* *
39631 TGA-ATATTATAGTATTATTATATTATATTATTATTA
1 T-ATATATTATATTA-TA-TATATTATATTATAATTA
*
39667 GTTTATATT-TATTA-ATAT
1 -TATATATTATATTATATAT
39685 GTTTTTTTTT
Statistics
Matches: 129, Mismatches: 9, Indels: 33
0.75 0.05 0.19
Matches are distributed among these distances:
29 9 0.07
30 6 0.05
31 5 0.04
32 16 0.12
33 9 0.07
34 18 0.14
35 13 0.10
36 26 0.20
37 26 0.20
38 1 0.01
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (34 bp):
TATATATTATATTATATATATTATATTATAATTA
Found at i:42374 original size:18 final size:18
Alignment explanation
Indices: 42351--42385 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
42341 GTAAAAGTGC
*
42351 ATAAAATTAAATAAAAAA
1 ATAAAATGAAATAAAAAA
*
42369 ATAAAATGCAATAAAAA
1 ATAAAATGAAATAAAAA
42386 TAAAATGTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (18 bp):
ATAAAATGAAATAAAAAA
Found at i:42662 original size:14 final size:14
Alignment explanation
Indices: 42638--42679 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
42628 CGTTCGTGAA
*
42638 CGTTCAGTTATGTT
1 CGTTCATTTATGTT
42652 CGTTCGA-TTATGTT
1 CGTTC-ATTTATGTT
42666 CGTTCATTTATGTT
1 CGTTCATTTATGTT
42680 TAACCAAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 1 0.04
14 24 0.92
15 1 0.04
ACGTcount: A:0.14, C:0.14, G:0.19, T:0.52
Consensus pattern (14 bp):
CGTTCATTTATGTT
Found at i:43696 original size:23 final size:23
Alignment explanation
Indices: 43663--43720 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
43653 AGCGGTTAGT
* *
43663 AATTAGTGGTTAGCTGTTAGAAA
1 AATTAGCGGTTAGCAGTTAGAAA
*
43686 AGTTAGCGGTTAGCAGTTAGAAA
1 AATTAGCGGTTAGCAGTTAGAAA
43709 AATTAGCGGTTA
1 AATTAGCGGTTA
43721 ATGGTTAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (23 bp):
AATTAGCGGTTAGCAGTTAGAAA
Found at i:43836 original size:29 final size:29
Alignment explanation
Indices: 43803--43862 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
43793 TATCAATGAT
* * *
43803 AAATAAATGTAAGTGGTTAATATGAAATA
1 AAATAAAAGTAAGTAGTTAACATGAAATA
*
43832 AAATAAAAGTTAGTAGTTAACATGAAATA
1 AAATAAAAGTAAGTAGTTAACATGAAATA
43861 AA
1 AA
43863 TAACATAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.55, C:0.02, G:0.15, T:0.28
Consensus pattern (29 bp):
AAATAAAAGTAAGTAGTTAACATGAAATA
Found at i:45480 original size:139 final size:139
Alignment explanation
Indices: 45270--45682 Score: 531
Period size: 139 Copynumber: 3.0 Consensus size: 139
45260 GTCATATCTG
** * * * *
45270 GAGATAACATGGAGACATCACGGCTCCTTCGTGTTGAGGATGTCTAATTGTCTGAGGATGACACT
1 GAGATAATTTGGAGACAACACGGTTCCTTCGTGTTGAGGAAGTCTGATTGTCTGAGGATGACACT
* * * *
45335 ACTCCTTTGCGTTGAGGAGATATGGTCGGTGGACGACATTGTTTCTTTGTGTTGAGGACGTCTAG
66 GCTCCTTTGCGTTGAGGAAATCTGGTCGGTGGATGACATTGTTTCTTTGTGTTGAGGACGTCTAG
45400 CCGTATTTA
131 CCGTATTTA
* * *
45409 GAGATAATTTGGAGACAACACGGTTCCTTCATGTTAAGGAAGTCTGATTGTCTAAGGATGACACT
1 GAGATAATTTGGAGACAACACGGTTCCTTCGTGTTGAGGAAGTCTGATTGTCTGAGGATGACACT
* ** * *
45474 GCTCCTTTGCATTGAGGAAATCTATTCGGTGGATGAAATTGTTTCTTCGTGTTGAGGACGTCTAG
66 GCTCCTTTGCGTTGAGGAAATCTGGTCGGTGGATGACATTGTTTCTTTGTGTTGAGGACGTCTAG
*
45539 CCATATTTA
131 CCGTATTTA
* * * * *
45548 GAGATAATTTGGAGACAACACAGTTCCTTCGTGTTGAGGAACTCTGATTGTCTGAGAATGAAACA
1 GAGATAATTTGGAGACAACACGGTTCCTTCGTGTTGAGGAAGTCTGATTGTCTGAGGATGACACT
* * * * * **
45613 GCTCATTTACGTTGAAGAAATCTGGTCGGTGGATAACATTGTTCCTTCT-TGTTGAGGATTTCTA
66 GCTCCTTTGCGTTGAGGAAATCTGGTCGGTGGATGACATTGTTTCTT-TGTGTTGAGGACGTCTA
45677 GCCGTA
130 GCCGTA
45683 ATTTGACGGT
Statistics
Matches: 233, Mismatches: 40, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
139 233 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (139 bp):
GAGATAATTTGGAGACAACACGGTTCCTTCGTGTTGAGGAAGTCTGATTGTCTGAGGATGACACT
GCTCCTTTGCGTTGAGGAAATCTGGTCGGTGGATGACATTGTTTCTTTGTGTTGAGGACGTCTAG
CCGTATTTA
Found at i:46252 original size:102 final size:104
Alignment explanation
Indices: 46068--46263 Score: 281
Period size: 102 Copynumber: 1.9 Consensus size: 104
46058 GCTATCTTAG
* * *
46068 GTGAGATAAAATTTTGTTTCGAGTGAAACAATTTCAAAATTTGCGTTTCAAGGGAAATTTATCTC
1 GTGAGATAAAATTTTGTTTCAAGTGAAACAATTTCAAAATTTGCGTTCCAAGGGAAAATTATCTC
* * *
46133 AAGCGTGGATAACTTTGTTTTGAG-GAAAATAATATCAA
66 AAGCGTAGATAAATTTGTTTCGAGAGAAAATAATATCAA
* * *
46171 GTGAGAT-CAATTTTGTTTCAAGTGAAACAATTTCAAAATTTGTGTTCCGAGGGAAAATTATCTC
1 GTGAGATAAAATTTTGTTTCAAGTGAAACAATTTCAAAATTTGCGTTCCAAGGGAAAATTATCTC
46235 AAGCG-AGATGAAATTTGTTTCGAGAGAAA
66 AAGCGTAGAT-AAATTTGTTTCGAGAGAAA
46264 CAATCTCAAA
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
101 3 0.04
102 68 0.83
103 11 0.13
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (104 bp):
GTGAGATAAAATTTTGTTTCAAGTGAAACAATTTCAAAATTTGCGTTCCAAGGGAAAATTATCTC
AAGCGTAGATAAATTTGTTTCGAGAGAAAATAATATCAA
Found at i:48709 original size:17 final size:16
Alignment explanation
Indices: 48688--48727 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
48678 AAAAAAAATC
48688 ATAAAATTAAATAAAA
1 ATAAAATTAAATAAAA
*
48704 AGTAAAATTCAATAAAA
1 A-TAAAATTAAATAAAA
48721 ATAAAAT
1 ATAAAAT
48728 GTCAGTGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.25
Consensus pattern (16 bp):
ATAAAATTAAATAAAA
Found at i:48885 original size:16 final size:16
Alignment explanation
Indices: 48866--48918 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
48856 GTAATTAGTG
*
48866 GTTAGAAAGGTTAGCT
1 GTTAGAAAAGTTAGCT
*
48882 GTTAGAAAAGTTAGTT
1 GTTAGAAAAGTTAGCT
* *
48898 GTTAGAAAAATTAGCG
1 GTTAGAAAAGTTAGCT
48914 GTTAG
1 GTTAG
48919 TGGTTAGCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.36, C:0.04, G:0.28, T:0.32
Consensus pattern (16 bp):
GTTAGAAAAGTTAGCT
Found at i:49826 original size:14 final size:13
Alignment explanation
Indices: 49795--49852 Score: 57
Period size: 14 Copynumber: 4.4 Consensus size: 13
49785 TATGCTGGCC
49795 CAAAAA-AGA-AA
1 CAAAAATAGAGAA
*
49806 AAAAAATGAGAGAA
1 CAAAAAT-AGAGAA
49820 CAAAAATAAGAGAAA
1 CAAAAAT-AGAG-AA
*
49835 GAAAAATAGAGAA
1 CAAAAATAGAGAA
49848 CAAAA
1 CAAAA
49853 GAAAAGTTAC
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
11 5 0.13
13 9 0.24
14 16 0.42
15 8 0.21
ACGTcount: A:0.74, C:0.05, G:0.16, T:0.05
Consensus pattern (13 bp):
CAAAAATAGAGAA
Found at i:50423 original size:76 final size:76
Alignment explanation
Indices: 50334--50474 Score: 248
Period size: 76 Copynumber: 1.9 Consensus size: 76
50324 ATTTGAAATA
*
50334 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAA-TATTTTAATTAAGTTTT
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATA-GTTTTAAGTATTTTAATTAAGATTT
50398 AGGATATTATTT
65 AGGATATTATTT
*
50410 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGTTTTAAGTGTTTTAATTAAGATTTA
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGTTTTAAGTATTTTAATTAAGATTTA
50475 AGATGTTTTA
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
75 7 0.11
76 55 0.89
ACGTcount: A:0.28, C:0.01, G:0.12, T:0.59
Consensus pattern (76 bp):
TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGTTTTAAGTATTTTAATTAAGATTTA
GGATATTATTT
Found at i:54014 original size:5 final size:5
Alignment explanation
Indices: 54006--54035 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
53996 TTCATTCTAT
54006 TTTTA TTTTA TTTTA TTTTCA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTT-A TTTTA TTTT
54036 TTAACAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:54022 original size:16 final size:16
Alignment explanation
Indices: 53993--54035 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
53983 GGAGGCAACC
* *
53993 CATTTCATTCTATTTT
1 CATTTTATTTTATTTT
*
54009 TATTTTATTTTATTTT
1 CATTTTATTTTATTTT
54025 CATTTTATTTT
1 CATTTTATTTT
54036 TTAACAAACT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (16 bp):
CATTTTATTTTATTTT
Found at i:56031 original size:44 final size:44
Alignment explanation
Indices: 55982--56108 Score: 127
Period size: 44 Copynumber: 3.2 Consensus size: 44
55972 TTAAATATTA
55982 TATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAG
1 TATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAG
**
56026 TATTTTAAT-TAAGTTTTAGG-A---TA--TT--AT---TTTTA-
1 TATTTT-ATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAG
*
56058 TATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTTG
1 TATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAG
56102 TATTTTA
1 TATTTTA
56109 ATTAAGTTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 28
0.66 0.05 0.29
Matches are distributed among these distances:
31 2 0.03
32 15 0.23
33 6 0.09
36 4 0.06
38 4 0.06
40 4 0.06
43 5 0.08
44 22 0.34
45 2 0.03
ACGTcount: A:0.24, C:0.02, G:0.13, T:0.61
Consensus pattern (44 bp):
TATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAG
Found at i:56086 original size:76 final size:76
Alignment explanation
Indices: 55979--56188 Score: 359
Period size: 76 Copynumber: 2.8 Consensus size: 76
55969 ATTTTAAATA
*
55979 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGTTTTA
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGTTATA
*
56044 GGATATTATTT
66 AGATATTATTT
*
56055 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTTGTATTTTAATTAAGTTATA
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGTTATA
56120 AGATATTATTT
66 AGATATTATTT
* *
56131 TTATATTTTATCTTTGTTTTAGGTATTTTAATTTAAATA-GTTTTAAGTGTTTTAATTA
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTT-AGTATTTTAATTA
56189 GGATTTAAGA
Statistics
Matches: 127, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
75 5 0.04
76 122 0.96
ACGTcount: A:0.27, C:0.01, G:0.12, T:0.60
Consensus pattern (76 bp):
TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAAGTTATA
AGATATTATTT
Found at i:56826 original size:18 final size:19
Alignment explanation
Indices: 56788--56830 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
56778 TTTAATTTGA
* *
56788 TTATTTAATTATTTTTCTT
1 TTATTTAATTACTTATCTT
56807 TTATTTAATT-CTTATCTT
1 TTATTTAATTACTTATCTT
56825 TTATTT
1 TTATTT
56831 TAAAAACAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (19 bp):
TTATTTAATTACTTATCTT
Found at i:56925 original size:18 final size:18
Alignment explanation
Indices: 56860--56926 Score: 54
Period size: 17 Copynumber: 3.9 Consensus size: 18
56850 TCTCCTTTTA
* *
56860 TATTTATTACTATTAATATT
1 TATTTATT-TTATT-ATAAT
56880 TA-TTATTTTATTAT-A-
1 TATTTATTTTATTATAAT
*
56895 T-TTTCTTTT-TTATAAT
1 TATTTATTTTATTATAAT
56911 TATTTATTTTATTATA
1 TATTTATTTTATTATA
56927 CTTTTTCAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
14 4 0.11
15 8 0.21
16 1 0.03
17 9 0.24
18 9 0.24
19 5 0.13
20 2 0.05
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (18 bp):
TATTTATTTTATTATAAT
Found at i:58703 original size:14 final size:14
Alignment explanation
Indices: 58686--58713 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
58676 ACAGTTTATG
58686 ATTCTTTATAGACC
1 ATTCTTTATAGACC
58700 ATTCTTTATAGACC
1 ATTCTTTATAGACC
58714 GAACAAAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (14 bp):
ATTCTTTATAGACC
Found at i:59621 original size:13 final size:13
Alignment explanation
Indices: 59603--59627 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59593 ATCTTGGAAC
59603 ACAAAACTACAAT
1 ACAAAACTACAAT
59616 ACAAAACTACAA
1 ACAAAACTACAA
59628 AAAAATATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.24, G:0.00, T:0.12
Consensus pattern (13 bp):
ACAAAACTACAAT
Found at i:59737 original size:20 final size:20
Alignment explanation
Indices: 59712--59750 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
59702 TAAACTTTTA
*
59712 TTTATATTTGTTGAAAATTG
1 TTTATATTTGTTAAAAATTG
*
59732 TTTATATTTTTTAAAAATT
1 TTTATATTTGTTAAAAATT
59751 TCAGTTTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (20 bp):
TTTATATTTGTTAAAAATTG
Found at i:64058 original size:492 final size:493
Alignment explanation
Indices: 63134--64129 Score: 1778
Period size: 492 Copynumber: 2.0 Consensus size: 493
63124 TTAAATGATA
63134 TTCAGTTTTAATTGATAATTTTTTTATGAAATGATATTGATAATTTTTTAATGATTTGTTTATCT
1 TTCAGTTTTAATTGATAATTTTTTTATGAAATGATATTGATAATTTTTTAATGATTTGTTTATCT
*
63199 TTTCTTAACAAAGTTTTTAGCTACCGTGTCAACAATTCGAATAGCATATAACATTTAATTATTTT
66 TTTCTTAACAAAGTTTTTAACTACCGTGTCAACAATTCGAATAGCATATAACATTTAATTATTTT
*
63264 GATTGAAATAATATTAGAAGTTCAATAATCTAATTGATTTTTTTTTTGTTCAGATCAAAACAAAC
131 GATTGAAATAATATTAGAAGTTCAATAATCTAATTGATATTTTTTTTGTTCAGATCAAAACAAAC
* *
63329 TCAATCAAATAGTTTATTGATTTTGAAAGGTTATACCTAGGATTGTAGATGAGTTGAGATAGATC
196 TCAATCAAATAGTTTATTGATTTTGAAAGGTTATAACTAGGATTGTAGATGAGTTGAGACAGATC
63394 GGGAGATACTTGAGATCGACTCGGTCAAAGCTCGATATATACTGAACTCGAATGGACTAGACTCG
261 GGGAGATACTTGAGATCGACTCGGTCAAAGCTCGATATATACTGAACTCGAATGGACTAGACTCG
* * * *
63459 AGCTTGAGCTCGCTCGAGTTCTTAACGAGTCGAAACAAGCTACTTGATACTCGGACTCGAAAATA
326 AGCTTGAGCTCACTCGAGTTCTTAACGAGTCGAAACAAGCTACTTAATACTCGAACTCAAAAATA
* *
63524 TAATTTATTAAAATTTTATTTTTAAAATAAATTATTAATAATATTAACATTTGTATT-GTTTTTT
391 TAATATATTAAAATTCTATTTTTAAAATAAATTATTAATAATATTAACATTTGTATTGGTTTTTT
* * *
63588 AAATATAGTATAAGGTTTTCATGTATTTAAGGTTTATG
456 AAATACAATATAAGGTTTTCATGTATTTAAGGTTCATG
63626 TTCAGTTTTAATTGATAATTTTTTTATGAAATGATATTGATAATTTTTTAATGATTTGTTTATCT
1 TTCAGTTTTAATTGATAATTTTTTTATGAAATGATATTGATAATTTTTTAATGATTTGTTTATCT
63691 TTTCTTAACAAAGTTTTTAACTACCGTGTCAACAATTCGAATAGCATATAACATTTAATTATTTT
66 TTTCTTAACAAAGTTTTTAACTACCGTGTCAACAATTCGAATAGCATATAACATTTAATTATTTT
* *
63756 GATTGAAATAATATTAGAAGTTCAATAATCTAATTGATATTTTTTTTGTTCTGATCAAAACAGAC
131 GATTGAAATAATATTAGAAGTTCAATAATCTAATTGATATTTTTTTTGTTCAGATCAAAACAAAC
* * *
63821 TCAATCACATAGTTTATTGATTTTGAAAGGTTATAACTAGGGTTGTAGATGAGTTGAGACAGATT
196 TCAATCAAATAGTTTATTGATTTTGAAAGGTTATAACTAGGATTGTAGATGAGTTGAGACAGATC
**
63886 TTGAGATACTTGAGATCGACTCGGTCAAAGCTCGATATATACTGAACTCGAATGGACTAGACTCG
261 GGGAGATACTTGAGATCGACTCGGTCAAAGCTCGATATATACTGAACTCGAATGGACTAGACTCG
*
63951 AGCTTGAGCTCACTCGAGTTCTTAACGAGTCGAAACAAGCTACTTAATACTCGAACTCAAAAATT
326 AGCTTGAGCTCACTCGAGTTCTTAACGAGTCGAAACAAGCTACTTAATACTCGAACTCAAAAATA
64016 TAATATATTAAAATTCTATTTTTAAAATAAATTATTAATAATATTAACATTTGTATTGGTTTTTT
391 TAATATATTAAAATTCTATTTTTAAAATAAATTATTAATAATATTAACATTTGTATTGGTTTTTT
*
64081 AAATACAATATAAGGTTTTTATGTATTTAAGGTTCATG
456 AAATACAATATAAGGTTTTCATGTATTTAAGGTTCATG
*
64119 TTCAATTTTAA
1 TTCAGTTTTAA
64130 GCTCCAATCG
Statistics
Matches: 480, Mismatches: 23, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
492 429 0.89
493 51 0.11
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (493 bp):
TTCAGTTTTAATTGATAATTTTTTTATGAAATGATATTGATAATTTTTTAATGATTTGTTTATCT
TTTCTTAACAAAGTTTTTAACTACCGTGTCAACAATTCGAATAGCATATAACATTTAATTATTTT
GATTGAAATAATATTAGAAGTTCAATAATCTAATTGATATTTTTTTTGTTCAGATCAAAACAAAC
TCAATCAAATAGTTTATTGATTTTGAAAGGTTATAACTAGGATTGTAGATGAGTTGAGACAGATC
GGGAGATACTTGAGATCGACTCGGTCAAAGCTCGATATATACTGAACTCGAATGGACTAGACTCG
AGCTTGAGCTCACTCGAGTTCTTAACGAGTCGAAACAAGCTACTTAATACTCGAACTCAAAAATA
TAATATATTAAAATTCTATTTTTAAAATAAATTATTAATAATATTAACATTTGTATTGGTTTTTT
AAATACAATATAAGGTTTTCATGTATTTAAGGTTCATG
Found at i:66682 original size:29 final size:29
Alignment explanation
Indices: 66649--66707 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
66639 CTATTTAATA
66649 AATCGCGTATAATCATAAAATAATAATTT
1 AATCGCGTATAATCATAAAATAATAATTT
66678 AATCGCGTATAATCATAAAATAATAATTT
1 AATCGCGTATAATCATAAAATAATAATTT
66707 A
1 A
66708 TCATCCAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.10, G:0.07, T:0.34
Consensus pattern (29 bp):
AATCGCGTATAATCATAAAATAATAATTT
Found at i:70451 original size:13 final size:14
Alignment explanation
Indices: 70433--70462 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
70423 GTAGCATTAA
70433 AATAAAA-AAATAG
1 AATAAAATAAATAG
70446 AATAAAATAAATAG
1 AATAAAATAAATAG
70460 AAT
1 AAT
70463 TAAAGCACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (14 bp):
AATAAAATAAATAG
Found at i:71308 original size:17 final size:18
Alignment explanation
Indices: 71276--71309 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
71266 ATCGACGCAC
*
71276 AACAATAGCTACAACATT
1 AACAATAGCCACAACATT
71294 AACAATA-CCACAACAT
1 AACAATAGCCACAACAT
71310 CACTATATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.53, C:0.26, G:0.03, T:0.18
Consensus pattern (18 bp):
AACAATAGCCACAACATT
Found at i:78680 original size:17 final size:18
Alignment explanation
Indices: 78648--78681 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
78638 ATCGACGCAC
*
78648 AACAATAGCTACAACATT
1 AACAATAGCCACAACATT
78666 AACAATA-CCACAACAT
1 AACAATAGCCACAACAT
78682 CACTATATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.53, C:0.26, G:0.03, T:0.18
Consensus pattern (18 bp):
AACAATAGCCACAACATT
Found at i:82931 original size:6 final size:6
Alignment explanation
Indices: 82920--82966 Score: 67
Period size: 6 Copynumber: 7.3 Consensus size: 6
82910 TTAGTTTAAC
82920 TTTTTA TTTTTA TTTTATTA TTTTTA TTTTTA TTTTTA TATTTTA TT
1 TTTTTA TTTTTA -TTT-TTA TTTTTA TTTTTA TTTTTA T-TTTTA TT
82967 AGTTTTACTT
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
6 23 0.61
7 12 0.32
8 3 0.08
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:82940 original size:14 final size:14
Alignment explanation
Indices: 82923--82980 Score: 73
Period size: 14 Copynumber: 4.1 Consensus size: 14
82913 GTTTAACTTT
82923 TTATTTTTATTTTA
1 TTATTTTTATTTTA
82937 TTATTTTTATTTTTA
1 TTATTTTTA-TTTTA
*
82952 TT-TTTATATTTTA
1 TTATTTTTATTTTA
* *
82965 TTAGTTTTACTTTA
1 TTATTTTTATTTTA
82979 TT
1 TT
82981 TTCTTTTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
13 7 0.18
14 24 0.63
15 7 0.18
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.76
Consensus pattern (14 bp):
TTATTTTTATTTTA
Found at i:83678 original size:44 final size:43
Alignment explanation
Indices: 83612--83759 Score: 206
Period size: 44 Copynumber: 3.4 Consensus size: 43
83602 AAGAAAAAAA
* * *
83612 TAGGAATAAGTTGGAAAAGCTGGTAATAGCTCCAATATAGTCT
1 TAGGAATAAGTTGGAAAGGCTGGTAATAGCTTCAACATAGTCT
*
83655 TAGGAAATAAGTTGGAAAGGCTGGTAATAACTTCAACATAGTCT
1 TAGG-AATAAGTTGGAAAGGCTGGTAATAGCTTCAACATAGTCT
* *
83699 TAGGGAATAAGTTGGAAAGGTTGGTAATAGTTTCAACATAGTCT
1 TA-GGAATAAGTTGGAAAGGCTGGTAATAGCTTCAACATAGTCT
*
83743 TTGTGAATAAGTTGGAA
1 TAG-GAATAAGTTGGAA
83760 TGTTGAAAAG
Statistics
Matches: 94, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
43 5 0.05
44 87 0.93
45 2 0.02
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.30
Consensus pattern (43 bp):
TAGGAATAAGTTGGAAAGGCTGGTAATAGCTTCAACATAGTCT
Found at i:90523 original size:3 final size:3
Alignment explanation
Indices: 90515--90555 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
90505 ATATATTAAT
* * *
90515 TAA TAA TAA TAA TAA TAA TAA TAT TAA TAT TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
90556 TTTATAACCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:90557 original size:9 final size:9
Alignment explanation
Indices: 90507--90562 Score: 67
Period size: 9 Copynumber: 6.1 Consensus size: 9
90497 AATGTAAAAT
90507 ATATTAATTA
1 ATATTAA-TA
*
90517 ATAATAATA
1 ATATTAATA
*
90526 ATAATAATA
1 ATATTAATA
90535 ATATTAATA
1 ATATTAATA
*
90544 TTATTAATA
1 ATATTAATA
*
90553 ATATTTATA
1 ATATTAATA
90562 A
1 A
90563 CCCGAAAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
9 35 0.85
10 6 0.15
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
ATATTAATA
Found at i:90773 original size:55 final size:55
Alignment explanation
Indices: 90705--93358 Score: 2331
Period size: 55 Copynumber: 48.8 Consensus size: 55
90695 TCGACCAGCA
* * * *
90705 GGTTCGCTCCCTCTTGCTTTAGGAAGTATGGAACTCGAACAATCTTCTGCCTACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
** * *
90760 GGTTCGTTTCCTCTTGCTTCAGGGAG--TAGAACTCGATCAATCTTCTGCCTACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
*
90813 GGTTCGCTCCCTCTTGCTTCAGGGAG--TAGAACTCGAACAATCTTCTGCCTACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * * ** *
90866 AGTTCGCTCCCTTTTTCTTCAAAGAG--TAGAACTCGAACAATATTCTGCCTACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * * *
90919 TGTTCGCTACCTCTTGCTTCAGGGAG-A-AGAACTCGAACAATTTTCGGCCTACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * * * *
90972 AGTTCACTCCCTCTTTCTTCAAGGAG--TAGAACTTGAACAATTTTCTACCTACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * * * *
91025 GGTTCGCTCCCTCTAGCTTCAGGGAG--TAGAACTCGAATAGTCTTTTGCCAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * ** *
91078 GGTTCACTCCCTCTTGCTTTAGGGAGTATAGAACTCAAACCATCTTCTTACAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * *** *
91133 GGTTCTCTTCCTCTTGGTTCAGGGAGTATAGAACTCGAACAATCTTCTGTGAATG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * * * * *
91188 GGTTTACTCCCTCTTGTTTTAGGGATTATAGAACTCCAACAATCTTTTG-CTAACC
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * * * *
91243 GGTTCACTCCCTCTTGCTTCAGGTAGTATAGAACTCGAATAATCTTCTACCAATG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
*
91298 GGTTCACTCCCTCTTG-TATCAAGGAGTATAGAACTCGAACAATCTTCTG-CTAACG
1 GGTTCACTCCCTCTTGCT-TCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * * *
91353 GGTTCACTCCCTCTTGTTTCAGGGAGTATACAACTCGAATAATCTTATGCC-A--
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * *
91405 -----A--CCCTCCTGCTTCAGGGAG--T-G---T--AACAATCTT-TGTCTAACA
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * * * * *
91445 AGTTCACTCCCTTTTGCTTCAGGGAGTATAGAACTCAAATAATCTTCTACCAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
*
91500 GGTTCACTCCCT-TTAGCTTCAGGGAGTATAGAACTCGAACAATCTTCT-ACTAACG
1 GGTTCACTCCCTCTT-GCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* *
91555 GGTTCACTCCCTCTTGCTTCAGGGAGTGTAGAACTCAAACAATCTTCTG-CTAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * * * * *
91610 GGTTCACTACCTCTTGCTTAAGAGAGTATAGAACTCAAAAAATCTTCTGCCAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* ** * *
91665 GGTTCGCTCTATCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTG-CTAATG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
** * * * *
91720 GGTTCGTTCCCTCTTGCTTCAGGGAGTGTAGAACTCGAACAATGTTCT-TCTAATG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
** * * * * **
91775 ACTTCGCTCCTTCTTGCTTCAGGGAGTATAGAAATCGAATAATCTTCTGCGAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * *
91830 GGTTCGCTCCCTCTTGCTTCAGGCAGTATAGAACTCGAACAATCTTCTGCCAATG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
** * * * * *
91885 GGTTTGCTCTCTCTTGCTTCAGGGAATATAGAAATCGAATAATCTTCTGCCAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * * *
91940 GGTTCGCTCTCTCTTACTTCAGGGAGTGTAGAACTCGAACAATCTTCT-CCTAATG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * ***
91995 GGTTCGCAT-CCTCTTGCTTCAGGGAGTATAGAATTCGAACAATCTTCTGTGAACG
1 GGTTCAC-TCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
*** * *
92050 GGTTTGTTCCCTCTTGCTTCAAGGAGTGTAGAACTCGAACAATCTTCTG-CTAATC-
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-A-CG
* * * * *
92105 GGTTCGCTCCCTCTTGCTTCAGGTAGTATAGAACTCGAATAATCTGCTGCCAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* ** * *
92160 GGTTCGCTTTCTCTTGCTTCAGGGAGTATTGAACTCGAATAATCTTCTG-CTAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* ** * * * * * *
92215 AGTTTGCTCCCTCTTTCTTTAGGGAGTATACAACTCGAATAATCTTCTGCCAATG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * * * *
92270 GATTCGCTCCCTCCTT-CTTCAGTGAATGTAGAACTCGAACAATCTTCTG-CTAACA
1 GGTTCACTCCCT-CTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * * * *
92325 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACT
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* ** * *
92380 GCTTGGCTCCCTCTTACTTCAGGGAGTATAGAACTCGAACAATCTTCTG-ATAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * *
92435 GGTTCGCTCCCTCTTGCTTCAGGGAGTGTAGAACTCGAACAATCTTCTG-CTAATG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * * * * * *
92490 GGTTCGCTCCCTCTTACTTCAGGGAGTATAGAACTCAAATAATCTTCTTCCAATG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * *
92545 GGTTCGCTCCCTCTTGCTTTAGGGAGTATAGAACTCAAACATTCTTCTG-CTAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* *
92600 GGTTCGCTCCCTCTTGCTTCAGGGAGTGTAGAACTCGAACAATCTTCTG-CTAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * * * * *
92655 GGTT-AGCTCCTTATTGCTTCAGGAAGTATAGAACTCGAATAATCTTCTGTCAACG
1 GGTTCA-CTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * * *
92710 GGTTCGCTCCCTCTTGTTTCAGGCAGTATAGAACTCGATCAATCTTCTGCCAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * * *
92765 GGTTCGCTCCCTCTTGCTTCATGGAATACAGAACTCGAACAATCTTCTGCCAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * * **
92820 GGTTCGCTCCCTCTTGCTTCATGGAATACAGAACTCGAACAATCTTCT-AATAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * * ** *
92875 GGTTCGCTCCCTCTTGCTTCAGGGAGTGTAGAAATTAAACAATCTTCTG-TTAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * *
92930 AGTT-A-TTCCT-TT-CTTCAGGGAGTATAGAACTTGAACAATCTTCTG-CTAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * ** ** *
92981 GGTTCGCTCCCTCTTGCTTCAGGGAGTGTAGAACTTAAACAATCTTCT-ATTAATG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * * * * * * * * *
93036 GGTTCGCTCCTTCTTGCTTCAGTGAGTATAGATCTCGAATAATTTTTTTTCCAATG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAA-TCTTCTGCCTACG
* * * * *
93092 AGTTCGA-TCCCTCTTGCTTTAGGAAGTATAGAACTCGAACAATCTTCTACCAACG
1 GGTTC-ACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * * * *
93147 AGG-GCGCTCCCTCTTACTTTAGGAAGTATAGAACTCGAACAATCTTCTG-TTAACG
1 -GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * *
93202 GGTTCGCTCCCTCTTGCTTCAGGGAGTGTAAAACTCGAACAATCTTCTG-CTAACG
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCT-ACG
* * * * * *
93257 GGTT-AGTTTCCCTCTTACTTCAAGGAGTATAGAACTCGAATAATCTTCTGCCAATG
1 GGTTCA--CTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
* * * *
93313 GGTTCGCTCCCTCTTGCTTCAAGGAGTATAGAACTAGAATAATCTT
1 GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTT
93359 GATTTGCTTC
Statistics
Matches: 2165, Mismatches: 358, Indels: 152
0.81 0.13 0.06
Matches are distributed among these distances:
36 3 0.00
37 8 0.00
38 1 0.00
39 1 0.00
43 1 0.00
45 17 0.01
47 17 0.01
49 1 0.00
50 1 0.00
51 38 0.02
52 2 0.00
53 283 0.13
54 21 0.01
55 1668 0.77
56 102 0.05
57 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (55 bp):
GGTTCACTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCTACG
Found at i:91209 original size:110 final size:110
Alignment explanation
Indices: 90705--93358 Score: 2618
Period size: 110 Copynumber: 24.4 Consensus size: 110
90695 TCGACCAGCA
* * * * * * * *
90705 GGTTCGCTCCCTCTTGCTTTAGGAAGTATGGAACTCGAACAATCTTCTGCCTACGGGTTCGTTTC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* * *
90770 CTCTTGCTTCAGGGAG--TAGAACTCGATCAATCTTCTGCCTACG
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* * * *
90813 GGTTCGCTCCCTCTTGCTTCAGGGAG--TAGAACTCGAACAATCTTCTGCCTACGAGTTCGCTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* * ** * * *
90876 CTTTTTCTTCAAAGAG--TAGAACTCGAACAATATTCTGCCTACG
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* * * * * * * * *
90919 TGTTCGCTACCTCTTGCTTCAGGGAG-A-AGAACTCGAACAATTTTCGGCCTACGAGTTCACTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* * * * * *
90982 CTCTTTCTTCAAGGAG--TAGAACTTGAACAATTTTCTACCTACG
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* * * * *
91025 GGTTCGCTCCCTCTAGCTTCAGGGAG--TAGAACTCGAATAGTCTTTTGCCAACGGGTTCACTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* * * *
91088 CTCTTGCTTTAGGGAGTATAGAACTCAAACCATCTTCTTACAACG
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* * * * * * **
91133 GGTTCTCTTCCTCTTGGTTCAGGGAGTATAGAACTCGAACAATCTTCTGTGAATGGGTTTACTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* * * * * *
91198 CTCTTGTTTTAGGGATTATAGAACTCCAACAATCTT-TTGCTAACC
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTT-CCAACG
* * ** * *
91243 GGTTCACTCCCTCTTGCTTCAGGTAGTATAGAACTCGAATAATCTTCTACCAATGGGTTCACTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* * *
91308 CTCTTG-TATCAAGGAGTATAGAACTCGAACAATCTTCTGCTAACG
66 CTCTTGCT-TCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* * * * *
91353 GGTTCACTCCCTCTTGTTTCAGGGAGTATACAACTCGAATAATCTTATGCCAAC-----C-CT--
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* *
91410 C-C-TGCTTCAGGGAG--T-G---T--AACAATCTT-TGTCTAACA
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCT-TCCAACG
* * * * ** *
91445 AGTTCACTCCCTTTTGCTTCAGGGAGTATAGAACTCAAATAATCTTCTACCAACGGGTTCACTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* *
91510 CT-TTAGCTTCAGGGAGTATAGAACTCGAACAATCTTCTACTAACG
66 CTCTT-GCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* * * * * *
91555 GGTTCACTCCCTCTTGCTTCAGGGAGTGTAGAACTCAAACAATCTTCTG-CTAACGGGTTCACTA
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTC-AACGGGTTCGCTC
* * * * *
91619 CCTCTTGCTTAAGAGAGTATAGAACTCAAAAAATCTTCTGCCAACG
65 CCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
** * *
91665 GGTTCGCTCTATCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTG-CTAATGGGTTCGTTC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTC-AACGGGTTCGCTC
* * * *
91729 CCTCTTGCTTCAGGGAGTGTAGAACTCGAACAATGTTCTTCTAATG
65 CCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
** * *
91775 ACTTCGCTCCTTCTTGCTTCAGGGAGTATAGAAATCGAATAATCTTCTG-CGAACGGGTTCGCTC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTC-AACGGGTTCGCTC
* * *
91839 CCTCTTGCTTCAGGCAGTATAGAACTCGAACAATCTTCTGCCAATG
65 CCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* * * * * *
91885 GGTTTGCTCTCTCTTGCTTCAGGGAATATAGAAATCGAATAATCTTCTGCCAACGGGTTCGCTCT
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* * *
91950 CTCTTACTTCAGGGAGTGTAGAACTCGAACAATCTTC-TCCTAATG
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCC-AACG
* * * * *
91995 GGTTCGCAT-CCTCTTGCTTCAGGGAGTATAGAATTCGAACAATCTTCTGTGAACGGGTTTGTTC
1 GGTTCGC-TCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTC
* * * *
92059 CCTCTTGCTTCAAGGAGTGTAGAACTCGAACAATCTTCTGCTAATC-
65 CCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAA-CG
* * * **
92105 GGTTCGCTCCCTCTTGCTTCAGGTAGTATAGAACTCGAATAATCTGCTGCCAACGGGTTCGCTTT
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* * * *
92170 CTCTTGCTTCAGGGAGTATTGAACTCGAATAATCTTCTGCTAACG
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* * * * * * * *
92215 AGTTTGCTCCCTCTTTCTTTAGGGAGTATACAACTCGAATAATCTTCTGCCAATGGATTCGCTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* * * * * *
92280 CTCCTT-CTTCAGTGAATGTAGAACTCGAACAATCTTCTGCTAACA
66 CT-CTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* * *
92325 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACTGCTTGGCTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* ***
92390 CTCTTACTTCAGGGAGTATAGAACTCGAACAATCTTCTGATAACG
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* * *
92435 GGTTCGCTCCCTCTTGCTTCAGGGAGTGTAGAACTCGAACAATCTTCTG-CTAATGGGTTCGCTC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTC-AACGGGTTCGCTC
* * * *
92499 CCTCTTACTTCAGGGAGTATAGAACTCAAATAATCTTCTTCCAATG
65 CCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* * * *
92545 GGTTCGCTCCCTCTTGCTTTAGGGAGTATAGAACTCAAACATTCTTCTG-CTAACGGGTTCGCTC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTC-AACGGGTTCGCTC
* * *
92609 CCTCTTGCTTCAGGGAGTGTAGAACTCGAACAATCTTCTGCTAACG
65 CCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* * * *
92655 GGTTAGCTCCTTATTGCTTCAGGAAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* * * *
92720 CTCTTGTTTCAGGCAGTATAGAACTCGATCAATCTTCTGCCAACG
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* * * * *
92765 GGTTCGCTCCCTCTTGCTTCATGGAATACAGAACTCGAACAATCTTCTGCCAACGGGTTCGCTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* * * ***
92830 CTCTTGCTTCATGGAATACAGAACTCGAACAATCTTCTAATAACG
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* * ** * * * * *
92875 GGTTCGCTCCCTCTTGCTTCAGGGAGTGTAGAAATTAAACAATCTTCTGTTAACGAGTT--ATTC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* * *
92938 CT-TT-CTTCAGGGAGTATAGAACTTGAACAATCTTCTGCTAACG
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* ** * * * *
92981 GGTTCGCTCCCTCTTGCTTCAGGGAGTGTAGAACTTAAACAATCTTCTATTAATGGGTTCGCTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
* * * * * * *
93046 TTCTTGCTTCAGTGAGTATAGATCTCGAATAATTTTTTTTCCAATG
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAA-TCTTCTTCCAACG
* * * * * ** *
93092 AGTTCGATCCCTCTTGCTTTAGGAAGTATAGAACTCGAACAATCTTCTACCAACGAGG-GCGCTC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACG-GGTTCGCTC
* * * *
93156 CCTCTTACTTTAGGAAGTATAGAACTCGAACAATCTTCTGT-TAACG
65 CCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCT-TCCAACG
* * * * *
93202 GGTTCGCTCCCTCTTGCTTCAGGGAGTGTAAAACTCGAACAATCTTCTG-CTAACGGGTTAGTTT
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTC-AACGGGTTCG-CT
* * * * *
93266 CCCTCTTACTTCAAGGAGTATAGAACTCGAATAATCTTCTGCCAATG
64 CCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
* *
93313 GGTTCGCTCCCTCTTGCTTCAAGGAGTATAGAACTAGAATAATCTT
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTT
93359 GATTTGCTTC
Statistics
Matches: 2149, Mismatches: 342, Indels: 107
0.83 0.13 0.04
Matches are distributed among these distances:
91 1 0.00
92 61 0.03
94 1 0.00
97 2 0.00
98 3 0.00
100 10 0.00
101 3 0.00
102 12 0.01
104 3 0.00
105 2 0.00
106 318 0.15
107 2 0.00
108 74 0.03
109 17 0.01
110 1461 0.68
111 177 0.08
112 2 0.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (110 bp):
GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGTCAACGGGTTCGCTCC
CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCAACG
Found at i:91249 original size:165 final size:164
Alignment explanation
Indices: 90705--93358 Score: 2590
Period size: 165 Copynumber: 16.3 Consensus size: 164
90695 TCGACCAGCA
* * * * *
90705 GGTTCGCTCCCTCTTGCTTTAGGAAGTATGGAACTCGAACAATCTTCTGCCT-ACGGGTTCGTTT
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTG-CTAACGGGTTCGCTC
* ** *
90769 CCTCTTGCTTCAGGGAG--TAGAACTCGATCAATCTTCTGCCTACGGGTTCGCTCCCTCTTGCTT
65 CCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTACAACGGGTTCGCTCCCTCTTGCTT
*
90832 CAGGGAG--TAGAACTCGAACAATCTTCTGCCTACG
130 CAGGGAGTATAGAACTCGAACAATCTTCTG-CAACG
* * * ** * * *
90866 AGTTCGCTCCCTTTTTCTTCAAAGAG--TAGAACTCGAACAATATTCTGCCT-ACGTGTTCGCTA
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTG-CTAACGGGTTCGCTC
* *** * * * *
90928 CCTCTTGCTTCAGGGAG-A-AGAACTCGAACAATTTTCGGCCTACGAGTTCACTCCCTCTTTCTT
65 CCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTACAACGGGTTCGCTCCCTCTTGCTT
* * * * *
90991 CAAGGAG--TAGAACTTGAACAATTTTCTACCTACG
130 CAGGGAGTATAGAACTCGAACAATCTTCT-GCAACG
* * * * * *
91025 GGTTCGCTCCCTCTAGCTTCAGGGAG--TAGAACTCGAATAGTCTTTTGCCAACGGGTTCACTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCTCC
* * * * * *
91088 CTCTTGCTTTAGGGAGTATAGAACTCAAACCATCTTCTTACAACGGGTTCTCTTCCTCTTGGTTC
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTACAACGGGTTCGCTCCCTCTTGCTTC
* *
91153 AGGGAGTATAGAACTCGAACAATCTTCTGTGAATG
131 AGGGAGTATAGAACTCGAACAATCTTCTG-CAACG
** * * * * * * *
91188 GGTTTACTCCCTCTTGTTTTAGGGATTATAGAACTCCAACAATCTTTTGCTAACCGGTTCACTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCTCC
* * * *
91253 CTCTTGCTTCAGGTAGTATAGAACTCGAATAATCTTC-TACCAATGGGTTCACTCCCTCTTG-TA
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTA-CAACGGGTTCGCTCCCTCTTGCT-
*
91316 TCAAGGAGTATAGAACTCGAACAATCTTCTGCTAACG
129 TCAGGGAGTATAGAACTCGAACAATCTTCTGC-AACG
* * * * * *
91353 GGTTCACTCCCTCTTGTTTCAGGGAGTATACAACTCGAATAATCTTATGCCAAC-----C-CT--
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCTCC
** * *
91410 C-C-TGCTTCAGGGAG--T-G---T--AACAATCTT-TGT-CTAACAAGTTCACTCCCTTTTGCT
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCT-TAC-AACGGGTTCGCTCCCTCTTGCT
* * *
91463 TCAGGGAGTATAGAACTCAAATAATCTTCTACCAACG
129 TCAGGGAGTATAGAACTCGAACAATCTTCT-GCAACG
* * *
91500 GGTTCACTCCCT-TTAGCTTCAGGGAGTATAGAACTCGAACAATCTTCTACTAACGGGTTCACTC
1 GGTTCGCTCCCTCTT-GCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCTC
* * * * *
91564 CCTCTTGCTTCAGGGAGTGTAGAACTCAAACAATCTTC-TGCTAACGGGTTCACTACCTCTTGCT
65 CCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTAC-AACGGGTTCGCTCCCTCTTGCT
* * * *
91628 TAAGAGAGTATAGAACTCAAAAAATCTTCTGCCAACG
129 TCAGGGAGTATAGAACTCGAACAATCTTCTG-CAACG
** * * *
91665 GGTTCGCTCTATCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGCTAATGGGTTCGTTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCTCC
* * * ** *
91730 CTCTTGCTTCAGGGAGTGTAGAACTCGAACAATGTTCTT-CTAATGACTTCGCTCCTTCTTGCTT
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTAC-AACGGGTTCGCTCCCTCTTGCTT
* *
91794 CAGGGAGTATAGAAATCGAATAATCTTCTGCGAACG
130 CAGGGAGTATAGAACTCGAACAATCTTCTGC-AACG
* * * * *
91830 GGTTCGCTCCCTCTTGCTTCAGGCAGTATAGAACTCGAACAATCTTCTGCCAATGGGTTTGCTCT
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCTCC
* * * ** * *
91895 CTCTTGCTTCAGGGAATATAGAAATCGAATAATCTTCTGCCAACGGGTTCGCTCTCTCTTACTTC
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTACAACGGGTTCGCTCCCTCTTGCTTC
* * *
91960 AGGGAGTGTAGAACTCGAACAATCTTCTCCTAATG
131 AGGGAGTATAGAACTCGAACAATCTTCTGC-AACG
* * *
91995 GGTTCGCAT-CCTCTTGCTTCAGGGAGTATAGAATTCGAACAATCTTCTG-TGAACGGGTTTGTT
1 GGTTCGC-TCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCT-AACGGGTTCGCT
* * *
92058 CCCTCTTGCTTCAAGGAGTGTAGAACTCGAACAATCTTCTGCTA-ATC-GGTTCGCTCCCTCTTG
64 CCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCT--TACAACGGGTTCGCTCCCTCTTG
* * *
92121 CTTCAGGTAGTATAGAACTCGAATAATCTGCTGCCAACG
127 CTTCAGGGAGTATAGAACTCGAACAATCTTCTG-CAACG
** * * * *
92160 GGTTCGCTTTCTCTTGCTTCAGGGAGTATTGAACTCGAATAATCTTCTGCTAACGAGTTTGCTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCTCC
* * * * ** * *
92225 CTCTTTCTTTAGGGAGTATACAACTCGAATAATCTTCTGCCAATGGATTCGCTCCCTCCTT-CTT
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTACAACGGGTTCGCTCCCT-CTTGCTT
* * * *
92289 CAGTGAATGTAGAACTCGAACAATCTTCTGCTAACA
130 CAGGGAGTATAGAACTCGAACAATCTTCTGC-AACG
* * * *
92325 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTG-TCAACTGCTTGGCTC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCT-AACGGGTTCGCTC
* * *
92389 CCTCTTACTTCAGGGAGTATAGAACTCGAACAATCTTCTGATAACGGGTTCGCTCCCTCTTGCTT
65 CCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTACAACGGGTTCGCTCCCTCTTGCTT
* *
92454 CAGGGAGTGTAGAACTCGAACAATCTTCTGCTAATG
130 CAGGGAGTATAGAACTCGAACAATCTTCTGC-AACG
* * * * * *
92490 GGTTCGCTCCCTCTTACTTCAGGGAGTATAGAACTCAAATAATCTTCTTCCAATGGGTTCGCTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCTCC
* * * *
92555 CTCTTGCTTTAGGGAGTATAGAACTCAAACATTCTTC-TGCTAACGGGTTCGCTCCCTCTTGCTT
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTAC-AACGGGTTCGCTCCCTCTTGCTT
*
92619 CAGGGAGTGTAGAACTCGAACAATCTTCTGCTAACG
130 CAGGGAGTATAGAACTCGAACAATCTTCTGC-AACG
* * * * *
92655 GGTTAGCTCCTTATTGCTTCAGGAAGTATAGAACTCGAATAATCTTCTG-TCAACGGGTTCGCTC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCT-AACGGGTTCGCTC
* * * **
92719 CCTCTTGTTTCAGGCAGTATAGAACTCGATCAATCTTCTGCCAACGGGTTCGCTCCCTCTTGCTT
65 CCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTACAACGGGTTCGCTCCCTCTTGCTT
* * *
92784 CATGGAATACAGAACTCGAACAATCTTCTGCCAACG
130 CAGGGAGTATAGAACTCGAACAATCTTCTG-CAACG
* * * **
92820 GGTTCGCTCCCTCTTGCTTCATGGAATACAGAACTCGAACAATCTTCTAATAACGGGTTCGCTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCTCC
* * ** * * * *
92885 CTCTTGCTTCAGGGAGTGTAGAAATTAAACAATCTTCTGT-TAACGAGTT--ATTCCT-TT-CTT
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCT-TACAACGGGTTCGCTCCCTCTTGCTT
*
92945 CAGGGAGTATAGAACTTGAACAATCTTCTGCTAACG
130 CAGGGAGTATAGAACTCGAACAATCTTCTGC-AACG
* ** ** *
92981 GGTTCGCTCCCTCTTGCTTCAGGGAGTGTAGAACTTAAACAATCTTCTATTAATGGGTTCGCTCC
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCTCC
* * * * * * * * * *
93046 TTCTTGCTTCAGTGAGTATAGATCTCGAATAATTTTTTTTCCAATGAGTTCGATCCCTCTTGCTT
66 CTCTTGCTTCAGGGAGTATAGAACTCGAACAA-TCTTCTTACAACGGGTTCGCTCCCTCTTGCTT
* * *
93111 TAGGAAGTATAGAACTCGAACAATCTTCTACCAACG
130 CAGGGAGTATAGAACTCGAACAATCTTCT-GCAACG
* * * * *
93147 AGG-GCGCTCCCTCTTACTTTAGGAAGTATAGAACTCGAACAATCTTCTGTTAACGGGTTCGCTC
1 -GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCTC
* * * * * *
93211 CCTCTTGCTTCAGGGAGTGTAAAACTCGAACAATCTTC-TGCTAACGGGTTAGTTTCCCTCTTAC
65 CCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTAC-AACGGGTTCG-CTCCCTCTTGC
* * *
93275 TTCAAGGAGTATAGAACTCGAATAATCTTCTGCCAATG
128 TTCAGGGAGTATAGAACTCGAACAATCTTCTG-CAACG
* * *
93313 GGTTCGCTCCCTCTTGCTTCAAGGAGTATAGAACTAGAATAATCTT
1 GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTT
93359 GATTTGCTTC
Statistics
Matches: 2071, Mismatches: 345, Indels: 149
0.81 0.13 0.06
Matches are distributed among these distances:
146 3 0.00
147 100 0.05
148 3 0.00
149 1 0.00
152 2 0.00
153 3 0.00
155 12 0.01
156 2 0.00
157 13 0.01
158 1 0.00
159 181 0.09
160 4 0.00
161 173 0.08
162 13 0.01
163 45 0.02
164 19 0.01
165 1290 0.62
166 203 0.10
167 3 0.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (164 bp):
GGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCTCC
CTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTACAACGGGTTCGCTCCCTCTTGCTTC
AGGGAGTATAGAACTCGAACAATCTTCTGCAACG
Found at i:101688 original size:3 final size:3
Alignment explanation
Indices: 101680--101713 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
101670 AATCTAAAAT
101680 ATA ATA ATA ATTA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA
101714 TTTATAATCC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:101955 original size:55 final size:55
Alignment explanation
Indices: 101885--103066 Score: 1177
Period size: 55 Copynumber: 21.9 Consensus size: 55
101875 GTTCGACCAG
* *
101885 CGGGTTCGCTCCCTCTTGCTTCATGGAGTATAGAACTTGAACAATCTTCTTCCTA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTA
* * *
101940 CGAGTTCGTTCCCTCTTGCTTCAGGGAG--TAGAACTCGAACAATCTTCTGCCTA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTA
* * *
101993 CAGGTTCGCTCCCTCTTGCTTCAGGGA-T-TAGACCTCGAACAATCTTCTACCTA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTA
* * * * * * * *
102046 CGAGTTCGCTCTCTCTTGCTTCAAGGAG--TAGAACTCAAACAATCTTGTACTTG
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTA
*
102099 CGGGTTCGCTCCCTCTTGCTTCAGGGAG--TAGAACTCGAACAATCTTTTTCCTA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTA
* * * * * *
102152 TGAGTTCGCTCCTTCTTGCTTCAAGGAG--TAGAACTCGAACAATCTTCTGCGTA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTA
* * * *
102205 CAGGTTCACTCCCTCTTGCTTCAGGGAG--TAGAACTCGAAAAATCTT-TTACCAA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTT-CCTA
* **
102258 CGGGTTCTCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGT-GAA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCT-TCCTA
* * * * *
102313 CGGGTTCGTTCCCTCATGCTTCATGGAGTGTAGAACTCGAACAATCTTC-TGCTAA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCT-A
* * * * * *
102368 CGGGTTCGCTCCCTCTTGCTTCAGGTACTATAGAACTCCAATAATCTTCTGCCAA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTA
* *
102423 CGGGTTCGCTCCCTCTTGCTTTAGGGAGTATAGAACTCGAACAATCTTC-TGCTAA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCT-A
* * * * * *
102478 CGGGTTCGCTCCCTCTTGCTTCAGGTAGTATACAACTCAAATAATCTTCTGCCAA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTA
* * * *
102533 TGGGTTCGCTCCCTCTTGCTTTAAGGAGTATAGAACTCGAACAATCTTC-TGCTAA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCT-A
* * * * * *
102588 CGGGTTCACTCCCTCTTGCTTCAGGTACTATACAACTCGAATAATCTTCTGCC-A
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTA
* * * *
102642 --------ATCCCTCTTGCTTCAAGGAGTGTAGAACTCGAACAATCTT-TTGCTAA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCT-A
** * * * * * * * **
102689 CATGTTTGCTCCCTCTTTCTTCAGAGAGTATAGAACTTGAATATTCTTCTACAAA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTA
* * * * *
102744 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATGTTATGCCAA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTA
102799 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTT-CTAA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCT-A
** * * * *
102854 CATGTTCGCTCCCTCTTGCTTTAGGGAGTGTAGAACTCGAATAATCTTC-TGCTAA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCT-A
* * *
102909 CGGGTTCGCTCCCTCTTGCTTCAGGAAGTATAGAACTCGAATAATCTTC-TACTA
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTA
* * * * *
102963 GTGGGTTTGCTCCCTCTTGTTTCAGGGAGTATAGAACTCGAATAATCTTCTGT-CAA
1 -CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCT-TCCTA
* * *
103019 TGGGTTCGCTCCCTCTT-CTTTCATGGAGTATAGAACTCGAATAATCTT
1 CGGGTTCGCTCCCTCTTGC-TTCAGGGAGTATAGAACTCGAACAATCTT
103067 GATTTGCTTC
Statistics
Matches: 938, Mismatches: 158, Indels: 62
0.81 0.14 0.05
Matches are distributed among these distances:
45 2 0.00
46 33 0.04
47 1 0.00
52 1 0.00
53 272 0.29
54 6 0.01
55 614 0.65
56 7 0.01
57 2 0.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (55 bp):
CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTA
Found at i:102392 original size:110 final size:110
Alignment explanation
Indices: 101885--103066 Score: 1300
Period size: 110 Copynumber: 10.9 Consensus size: 110
101875 GTTCGACCAG
* * * * *
101885 CGGGTTCGCTCCCTCTTGCTTCATGGAGTATAGAACTTGAACAATCTTCTTCCT-ACGAGTTCGT
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTC-TGCTAACGGGTTCGC
* **
101949 TCCCTCTTGCTTCAGGGAG--TAGAACTCGAACAATCTTCTGCCTA
65 TCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGCGAA
* * * *
101993 CAGGTTCGCTCCCTCTTGCTTCAGGGA-T-TAGACCTCGAACAATCTTCTACCT-ACGAGTTCGC
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCT-GCTAACGGGTTCGC
* * * * * * ***
102055 TCTCTCTTGCTTCAAGGAG--TAGAACTCAAACAATCTTGTACTTG
65 TCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGCGAA
* * * *
102099 CGGGTTCGCTCCCTCTTGCTTCAGGGAG--TAGAACTCGAACAATCTTTTTCCT-ATGAGTTCGC
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATC-TTCTGCTAACGGGTTCGC
* * * *
102161 TCCTTCTTGCTTCAAGGAG--TAGAACTCGAACAATCTTCTGCGTA
65 TCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGCGAA
* * * * * * *
102205 CAGGTTCACTCCCTCTTGCTTCAGGGAG--TAGAACTCGAAAAATCTTTTACCAACGGGTTCTCT
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCT
* *
102268 CCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGTGAA
66 CCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGCGAA
* * * *
102313 CGGGTTCGTTCCCTCATGCTTCATGGAGTGTAGAACTCGAACAATCTTCTGCTAACGGGTTCGCT
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCT
* * * *
102378 CCCTCTTGCTTCAGGTACTATAGAACTCCAATAATCTTCTGCCAA
66 CCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGCGAA
*
102423 CGGGTTCGCTCCCTCTTGCTTTAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCT
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCT
* * * *
102488 CCCTCTTGCTTCAGGTAGTATACAACTCAAATAATCTTCTGCCAA
66 CCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGCGAA
* * * *
102533 TGGGTTCGCTCCCTCTTGCTTTAAGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCACT
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCT
* * * *
102598 CCCTCTTGCTTCAGGTACTATACAACTCGAATAATCTTCTGCCAA
66 CCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGCGAA
* * * ** *
102643 ---------TCCCTCTTGCTTCAAGGAGTGTAGAACTCGAACAATCTTTTGCTAACATGTTTGCT
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCT
* * * * * *
102699 CCCTCTTTCTTCAGAGAGTATAGAACTTGAATATTCTTCTACAAA
66 CCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGCGAA
* * * *
102744 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATGTTATGCCAACGGGTTCGCT
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCT
* * *
102809 CCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTTCTAA
66 CCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGCGAA
** * * *
102854 CATGTTCGCTCCCTCTTGCTTTAGGGAGTGTAGAACTCGAATAATCTTCTGCTAACGGGTTCGCT
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCT
* * * *
102919 CCCTCTTGCTTCAGGAAGTATAGAACTCGAATAATCTTCTACTAG
66 CCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGCGAA
* * * * *
102964 TGGGTTTGCTCCCTCTTGTTTCAGGGAGTATAGAACTCGAATAATCTTCTG-TCAATGGGTTCGC
1 CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCT-AACGGGTTCGC
*
103028 TCCCTCTT-CTTTCATGGAGTATAGAACTCGAATAATCTT
65 TCCCTCTTGC-TTCAGGGAGTATAGAACTCGAATAATCTT
103067 GATTTGCTTC
Statistics
Matches: 938, Mismatches: 117, Indels: 36
0.86 0.11 0.03
Matches are distributed among these distances:
101 85 0.09
105 6 0.01
106 221 0.24
107 4 0.00
108 71 0.08
109 2 0.00
110 549 0.59
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (110 bp):
CGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCTAACGGGTTCGCT
CCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGCGAA
Found at i:104369 original size:19 final size:18
Alignment explanation
Indices: 104355--104401 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
104345 AAATCTACTT
104355 TTTATATTTTCATCTCTTC
1 TTTAT-TTTTCATCTCTTC
* *
104374 TTTATTTTTACATTTTTTC
1 TTTATTTTT-CATCTCTTC
104393 TTT-TTTTTC
1 TTTATTTTTC
104402 GTTTTTTCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 1 0.04
18 9 0.36
19 15 0.60
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTTTCATCTCTTC
Found at i:104398 original size:17 final size:18
Alignment explanation
Indices: 104378--104415 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
104368 CTCTTCTTTA
104378 TTTTTACATTTTTTCT-T
1 TTTTTACATTTTTTCTCT
* *
104395 TTTTTTCGTTTTTTCTCT
1 TTTTTACATTTTTTCTCT
104413 TTT
1 TTT
104416 CTTCTTAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.05, C:0.13, G:0.03, T:0.79
Consensus pattern (18 bp):
TTTTTACATTTTTTCTCT
Found at i:123121 original size:18 final size:18
Alignment explanation
Indices: 123098--123136 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
123088 GCCTAGGGGA
123098 GGGGAAAATGTTGCTTCT
1 GGGGAAAATGTTGCTTCT
123116 GGGGAAAATGTTGCTTCT
1 GGGGAAAATGTTGCTTCT
123134 GGG
1 GGG
123137 ATCAGTTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.21, C:0.10, G:0.38, T:0.31
Consensus pattern (18 bp):
GGGGAAAATGTTGCTTCT
Found at i:125930 original size:14 final size:15
Alignment explanation
Indices: 125911--125950 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
125901 TCTCTTTCTA
*
125911 TATGCAGAGATTT-T
1 TATGCAGGGATTTAT
125925 TATGCAGGGATTTAT
1 TATGCAGGGATTTAT
125940 T-TGCAGGGATT
1 TATGCAGGGATT
125951 ACTCCCCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 22 0.92
15 2 0.08
ACGTcount: A:0.25, C:0.07, G:0.28, T:0.40
Consensus pattern (15 bp):
TATGCAGGGATTTAT
Found at i:126552 original size:20 final size:20
Alignment explanation
Indices: 126514--126579 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 20
126504 ATAAAGTTAA
*
126514 TGATTAATTTATAACAA-TT
1 TGATAAATTTATAACAATTT
*
126533 TGATAAATTTAATAATAATTT
1 TGATAAATTT-ATAACAATTT
* * *
126554 TTATAAATTT-TAAAAACTT
1 TGATAAATTTATAACAATTT
126573 TGATAAA
1 TGATAAA
126580 GTAAATATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
19 22 0.56
20 6 0.15
21 11 0.28
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (20 bp):
TGATAAATTTATAACAATTT
Found at i:127109 original size:32 final size:32
Alignment explanation
Indices: 127022--127110 Score: 121
Period size: 29 Copynumber: 2.9 Consensus size: 32
127012 TAAACACAAG
*
127022 CATGCTAAAGACATGGTACTAAGAAATAGGTA
1 CATGCTAAAGACATGGTACTAAGCAATAGGTA
* * *
127054 CATG-T-ATGACCTCG-ACTAAGCAATAGGTA
1 CATGCTAAAGACATGGTACTAAGCAATAGGTA
127083 CATGCTAAAGACATGGTACTAAGCAATA
1 CATGCTAAAGACATGGTACTAAGCAATA
127111 AGTATATGTT
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
29 18 0.38
30 7 0.15
31 7 0.15
32 15 0.32
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.22
Consensus pattern (32 bp):
CATGCTAAAGACATGGTACTAAGCAATAGGTA
Found at i:127296 original size:32 final size:32
Alignment explanation
Indices: 127251--127332 Score: 96
Period size: 32 Copynumber: 2.6 Consensus size: 32
127241 CACTCATATA
* *
127251 CATTA-TTCGAATGCAACATTGATTCT-ATTGTG
1 CATTATTTC-AATGCAACATCGACTCTCA-TGTG
*
127283 CATTATTTCAATGCAAGATCGACTCTCATGTG
1 CATTATTTCAATGCAACATCGACTCTCATGTG
*
127315 CATTATTTGAATGCAACA
1 CATTATTTCAATGCAACA
127333 CTGACTAGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
32 39 0.91
33 4 0.09
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (32 bp):
CATTATTTCAATGCAACATCGACTCTCATGTG
Found at i:127699 original size:32 final size:32
Alignment explanation
Indices: 127654--127735 Score: 96
Period size: 32 Copynumber: 2.6 Consensus size: 32
127644 CACTCATATA
* *
127654 CATTA-TTCGAATGCAACATTGATTCT-ATTGTG
1 CATTATTTC-AATGCAACATCGACTCTCA-TGTG
*
127686 CATTATTTCAATGCAAGATCGACTCTCATGTG
1 CATTATTTCAATGCAACATCGACTCTCATGTG
*
127718 CATTATTTGAATGCAACA
1 CATTATTTCAATGCAACA
127736 CTGACTAGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
32 39 0.91
33 4 0.09
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (32 bp):
CATTATTTCAATGCAACATCGACTCTCATGTG
Found at i:127984 original size:403 final size:403
Alignment explanation
Indices: 127232--128039 Score: 1535
Period size: 403 Copynumber: 2.0 Consensus size: 403
127222 TCTCTAAATA
127232 CGACACTGACACTCATATACATTATTCGAATGCAACATTGATTCTATTGTGCATTATTTCAATGC
1 CGACACTGACACTCATATACATTATTCGAATGCAACATTGATTCTATTGTGCATTATTTCAATGC
127297 AAGATCGACTCTCATGTGCATTATTTGAATGCAACACTGACTAGTTAACTAAGGGAACCCGATGT
66 AAGATCGACTCTCATGTGCATTATTTGAATGCAACACTGACTAGTTAACTAAGGGAACCCGATGT
127362 CACATAACACCGGTGCAGTTCCCACTAAGCTACTGAATAATCTCCTGGTCCTCACTTAGCCATCA
131 CACATAACACCGGTGCAGTTCCCACTAAGCTACTGAATAATCTCCTGGTCCTCACTTAGCCATCA
127427 GGTAGATCACGGAGGAAGAAACCGATGTCACATAGCATCAGTATGATTCCCACTCAACTGAAGCA
196 GGTAGATCACGGAGGAAGAAACCGATGTCACATAGCATCAGTATGATTCCCACTCAACTGAAGCA
127492 TTAGCTCGCTCTCACATAGACATCAAGCCAAGCTTTAAGTATATATATTGTACTAGACTAATGCA
261 TTAGCTCGCTCTCACATAGACATCAAGCCAAGCTTTAAGTATATATATTGTACTAGACTAATGCA
* *
127557 ACTATACATACATATCTAAGGGCCCAATACCATACGACTCTGACATCACTAACACACTCCTCGCA
326 ACTATACATACATATCTAAGGGCCCAATACCACACAACTCTGACATCACTAACACACTCCTCGCA
*
127622 AGTGTTTGAGCCT
391 AGTGTTCGAGCCT
*
127635 CGACTCTGACACTCATATACATTATTCGAATGCAACATTGATTCTATTGTGCATTATTTCAATGC
1 CGACACTGACACTCATATACATTATTCGAATGCAACATTGATTCTATTGTGCATTATTTCAATGC
127700 AAGATCGACTCTCATGTGCATTATTTGAATGCAACACTGACTAGTTAACTAAGGGAACCCGATGT
66 AAGATCGACTCTCATGTGCATTATTTGAATGCAACACTGACTAGTTAACTAAGGGAACCCGATGT
* *
127765 CACATAACACCGGTGCAGTTCCCACTAAGCTACTGAATGATCTTCTGGTCCTCACTTAGCCATCA
131 CACATAACACCGGTGCAGTTCCCACTAAGCTACTGAATAATCTCCTGGTCCTCACTTAGCCATCA
*
127830 GGTAGATCACGGAGGAAGAACCCGATGTCACATAGCATCAGTATGATTCCCACTCAACTGAAGCA
196 GGTAGATCACGGAGGAAGAAACCGATGTCACATAGCATCAGTATGATTCCCACTCAACTGAAGCA
127895 TTAGCTCGCTCTCACATAGACATCAAGCCAAGCTTTAAGTATATATATTGTACTAGACTAATGCA
261 TTAGCTCGCTCTCACATAGACATCAAGCCAAGCTTTAAGTATATATATTGTACTAGACTAATGCA
* *
127960 ATTATACATACATATCTAAGGGCCCAATACCACACAACTCTGACATCACTAACACACTCCTCGCG
326 ACTATACATACATATCTAAGGGCCCAATACCACACAACTCTGACATCACTAACACACTCCTCGCA
128025 AGTGTTCGAGCCT
391 AGTGTTCGAGCCT
128038 CG
1 CG
128040 CGCACTTACA
Statistics
Matches: 396, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
403 396 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (403 bp):
CGACACTGACACTCATATACATTATTCGAATGCAACATTGATTCTATTGTGCATTATTTCAATGC
AAGATCGACTCTCATGTGCATTATTTGAATGCAACACTGACTAGTTAACTAAGGGAACCCGATGT
CACATAACACCGGTGCAGTTCCCACTAAGCTACTGAATAATCTCCTGGTCCTCACTTAGCCATCA
GGTAGATCACGGAGGAAGAAACCGATGTCACATAGCATCAGTATGATTCCCACTCAACTGAAGCA
TTAGCTCGCTCTCACATAGACATCAAGCCAAGCTTTAAGTATATATATTGTACTAGACTAATGCA
ACTATACATACATATCTAAGGGCCCAATACCACACAACTCTGACATCACTAACACACTCCTCGCA
AGTGTTCGAGCCT
Found at i:131281 original size:18 final size:19
Alignment explanation
Indices: 131260--131306 Score: 71
Period size: 18 Copynumber: 2.6 Consensus size: 19
131250 GTAAAAAGAT
131260 ATTAAAAT-AATAAAAGCA
1 ATTAAAATAAATAAAAGCA
131278 ATT-AAATAAATAAAAGCA
1 ATTAAAATAAATAAAAGCA
*
131296 ATTAAAGTAAA
1 ATTAAAATAAA
131307 AATAAGAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 4 0.15
18 16 0.62
19 6 0.23
ACGTcount: A:0.66, C:0.04, G:0.06, T:0.23
Consensus pattern (19 bp):
ATTAAAATAAATAAAAGCA
Found at i:132993 original size:21 final size:21
Alignment explanation
Indices: 132946--132993 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
132936 AATGCATTTG
*
132946 ATTTTTTTTCTTTTTTTTCAC
1 ATTTTTGTTCTTTTTTTTCAC
* *
132967 ACTTTTGTTGTTTTGTTTTC-C
1 ATTTTTGTTCTTTT-TTTTCAC
132988 ATTTTT
1 ATTTTT
132994 TTTCATGTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.08, C:0.12, G:0.06, T:0.73
Consensus pattern (21 bp):
ATTTTTGTTCTTTTTTTTCAC
Found at i:135813 original size:7 final size:6
Alignment explanation
Indices: 135795--135842 Score: 60
Period size: 6 Copynumber: 7.5 Consensus size: 6
135785 TGCTTGATCG
*
135795 AATAAA AATAAA AAGTAAA AATAAA GATAAA AAGTAAAA AATAAA AAT
1 AATAAA AATAAA AA-TAAA AATAAA AATAAA AA-T-AAA AATAAA AAT
135843 TTAACGGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
6 24 0.65
7 8 0.22
8 5 0.14
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:135819 original size:19 final size:20
Alignment explanation
Indices: 135795--135842 Score: 80
Period size: 19 Copynumber: 2.5 Consensus size: 20
135785 TGCTTGATCG
135795 AATAAAAATAAAAAGT-AAA
1 AATAAAAATAAAAAGTAAAA
*
135814 AATAAAGATAAAAAGTAAAA
1 AATAAAAATAAAAAGTAAAA
135834 AATAAAAAT
1 AATAAAAAT
135843 TTAACGGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (20 bp):
AATAAAAATAAAAAGTAAAA
Done.