Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001331.1 Hibiscus syriacus cultivar Beakdansim tig00002599_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45014

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3365--3398
2
17.5
2
93
6
61
50
0
0
50
1.00
18166--18476
161
1.9
161
88
2
464
41
13
16
28
1.86
18453--18499
20
2.4
19
82
10
67
53
10
17
19
1.72
18464--18504
20
2.2
19
83
12
50
51
14
17
17
1.77
20720--20784
21
3.1
21
93
0
103
41
10
30
16
1.83
20818--20883
33
2.0
33
90
0
105
28
0
48
22
1.51
21673--21745
23
3.2
23
92
0
119
34
5
21
38
1.77
22162--22234
23
3.2
23
92
0
119
34
5
21
38
1.77
21416--23123
489
3.5
490
97
0
3167
41
7
10
39
1.69
22652--22724
23
3.2
23
90
0
110
35
5
20
38
1.76
23559--24227
183
3.7
182
85
3
826
44
13
14
27
1.82
24532--25333
200
4.0
199
87
2
1090
37
13
15
33
1.86
25810--25856
21
2.2
22
84
3
60
38
6
8
46
1.60
25817--25858
22
2.0
21
90
4
66
30
7
9
52
1.61
28614--28747
64
2.1
62
84
10
166
34
18
20
26
1.96
29304--29359
20
2.9
19
78
5
69
23
17
30
28
1.97
36111--36166
20
2.9
19
78
5
69
23
17
30
28
1.97
37653--37697
24
1.9
23
86
4
63
33
2
13
51
1.53
37663--37709
24
2.0
24
86
0
67
38
4
8
48
1.53
38526--39068
270
2.0
272
97
1
1020
24
18
19
37
1.94
39693--40493
199
4.0
199
88
4
1160
36
15
16
31
1.90
42268--42307
22
1.9
21
85
10
55
27
15
10
47
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42826--42871
23
2.0
24
82
4
58
34
21
13
30
1.91
42979--43030
23
2.3
23
79
0
68
34
13
7
44
1.72
42925--43179
132
1.9
133
84
7
340
34
11
10
43
1.75
43208--43260
16
3.2
16
89
2
79
35
20
1
41
1.64

Tables:   1

The End!