Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001332.1 Hibiscus syriacus cultivar Beakdansim tig00002601_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61391

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10605--10638
17
2.0
17
88
11
52
44
11
11
32
1.77
16885--16929
15
2.9
15
83
12
56
53
13
13
20
1.72
22128--22155
13
2.2
13
100
0
56
21
21
14
42
1.88
22710--22788
40
2.0
40
94
0
140
29
22
17
30
1.97
22694--22852
43
3.8
44
81
10
165
25
25
18
30
1.98
30730--30776
18
2.7
18
83
3
60
38
8
25
27
1.85
30763--30847
44
2.1
38
79
14
98
25
15
23
35
1.94
31167--31680
229
2.2
226
89
6
770
41
17
12
29
1.85
33481--33761
43
5.9
52
70
21
172
23
20
7
48
1.75
33384--33914
44
11.8
45
73
15
320
25
19
7
47
1.75
33633--33914
87
3.2
87
83
7
288
26
19
8
45
1.78
35367--35421
23
2.4
22
77
14
58
43
1
1
52
1.22
35468--35518
26
1.9
27
88
4
77
41
1
0
56
1.10
35542--35648
25
4.2
25
75
11
69
46
0
2
50
1.16
35595--35650
23
2.3
23
84
6
67
48
0
0
51
1.00
36347--36396
20
2.4
22
80
6
59
24
24
40
12
1.88
41113--41500
183
2.1
185
90
3
615
46
8
3
42
1.49
41622--41660
15
2.7
14
84
7
51
17
5
30
46
1.70
42566--42624
24
2.4
25
77
8
68
13
18
16
50
1.77
43754--43814
2
31.0
2
96
3
115
50
0
0
49
1.00
46461--46494
15
2.2
16
89
5
52
23
23
0
52
1.47
49317--49366
21
2.4
21
75
18
50
52
8
14
26
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53290--53320
2
15.5
2
100
0
62
51
0
0
48
1.00
60855--60888
17
2.0
17
94
0
59
32
5
17
44
1.73
60886--60940
23
2.4
23
84
3
76
34
18
20
27
1.95
60940--60974
18
1.9
18
88
0
52
22
20
31
25
1.98

Tables:   1

The End!