genome.fa.s1333.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001333.1 Hibiscus syriacus cultivar Beakdansim tig00002602_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116032

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6401--6449	19	2.5	19	80	12	55	22	36	28	12	1.90
8437--8515	5	14.6	5	82	12	77	15	6	3	74	1.16
18466--18495	3	10.0	3	92	0	51	63	0	0	36	0.95
18782--19382	128	4.6	128	78	7	523	29	17	28	25	1.97
19999--20283	85	3.4	84	75	6	254	24	19	20	35	1.96
20350--20616	86	3.1	86	83	3	340	25	22	22	29	1.99
22164--22337	52	3.4	52	88	3	244	24	23	14	36	1.93
23627--23717	5	17.8	5	77	17	82	1	17	1	80	0.84
23627--23718	28	3.3	26	82	10	103	1	17	1	80	0.83
23627--23718	23	4.2	22	78	13	100	1	17	1	80	0.83
23627--23721	17	5.7	16	78	12	93	1	17	1	80	0.84
25991--26064	2	37.5	2	97	2	141	51	0	0	48	1.00
27396--27438	20	2.2	20	86	0	59	30	13	20	34	1.92
39244--39680	106	4.1	106	85	2	585	23	18	22	36	1.95
39682--39765	43	2.0	42	90	2	132	21	16	32	29	1.95
41108--41143	18	2.0	18	94	0	63	41	33	8	16	1.78
42209--42265	18	3.1	19	75	10	73	0	14	7	78	0.94
42209--42271	16	3.8	16	78	17	74	0	14	7	77	0.97
42221--42258	11	3.7	10	83	16	51	0	13	7	78	0.94
50737--50777	20	1.9	23	85	14	61	36	2	12	48	1.54
50874--50924	23	2.3	22	80	6	68	17	39	21	21	1.93
55062--55105	15	2.9	15	86	6	54	81	0	0	18	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55061--55104	20	2.2	20	88	8	63	81	0	0	18	0.68
56434--56490	24	2.4	23	75	16	55	56	3	7	33	1.43
59228--59256	14	2.1	14	100	0	58	27	13	31	27	1.94
59950--60020	3	24.0	3	92	2	117	33	1	1	63	1.12
64884--64981	11	8.7	10	69	20	52	29	23	22	24	1.99
64895--65002	23	4.7	23	91	0	153	32	22	21	24	1.98
66669--66694	5	5.2	5	100	0	52	19	0	0	80	0.71
68409--68453	17	2.6	17	82	10	56	57	8	17	15	1.63
68458--68522	22	2.9	21	72	9	58	72	6	15	6	1.25
76686--76717	2	16.0	2	100	0	64	50	0	0	50	1.00
85104--85143	3	13.7	3	89	5	64	37	0	0	62	0.95
88921--89217	125	2.4	125	90	1	443	32	15	26	25	1.95
90160--90201	22	1.9	22	85	9	59	40	9	7	42	1.65
90412--90461	15	3.3	15	97	0	91	30	34	22	14	1.93
91112--91149	20	1.9	20	100	0	76	23	34	31	10	1.89
92820--92916	42	2.3	42	80	1	106	24	20	22	31	1.98
92601--93536	215	4.3	215	82	5	1101	32	16	19	31	1.94
93035--93143	42	2.6	41	80	2	110	25	22	19	32	1.97
92596--93536	440	2.2	430	83	5	1160	32	15	19	31	1.94
93688--93840	37	4.2	37	87	1	227	34	22	18	24	1.96
93688--93830	73	2.0	73	91	2	234	33	22	20	23	1.97
94009--94039	3	10.7	3	93	6	55	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94012--94039	14	2.0	14	100	0	56	35	0	0	64	0.94
99928--99952	13	1.9	13	100	0	50	40	8	24	28	1.83
101427--101504	41	2.0	40	82	10	97	17	34	25	21	1.96

Tables:   1

The End!