genome.fa.s1334.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001334.1 Hibiscus syriacus cultivar Beakdansim tig00002603_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133167

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4472--4515	14	3.0	14	77	9	52	54	2	0	43	1.12
9191--9254	3	21.3	3	80	0	65	39	0	4	56	1.20
9190--9252	9	7.0	9	81	0	72	39	0	4	55	1.21
10719--10862	72	2.0	73	83	2	184	43	6	11	38	1.68
12075--12113	19	2.1	19	85	9	53	15	2	0	82	0.79
12310--12412	36	2.9	36	98	0	197	45	17	8	28	1.78
12877--12966	43	2.1	43	95	0	162	33	8	23	34	1.86
13047--13108	26	2.3	27	83	10	74	16	14	11	58	1.64
13397--13480	42	2.0	42	83	0	105	47	13	20	19	1.82
18822--18974	54	2.9	54	75	7	141	36	13	20	28	1.91
19327--19370	20	2.2	20	95	0	79	29	15	13	40	1.86
20093--20163	20	3.3	20	65	24	54	22	25	19	32	1.98
20058--20607	45	12.2	45	95	0	965	25	21	19	33	1.97
20798--20822	3	8.3	3	100	0	50	36	0	0	64	0.94
22234--22280	19	2.3	20	78	7	51	31	6	0	61	1.21
22301--22587	160	1.8	159	79	8	334	39	6	6	46	1.57
31985--32050	3	21.7	3	93	3	114	65	0	3	31	1.08
54518--54548	14	2.2	14	94	0	53	22	9	12	54	1.67
54610--54677	23	2.9	23	76	8	66	22	5	4	67	1.30
62100--62259	61	2.6	61	88	0	239	27	16	26	29	1.97
71584--71681	31	3.1	31	94	5	178	58	12	9	20	1.61
71584--71684	33	3.1	33	97	2	188	58	11	8	20	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87136--87185	25	2.0	25	92	0	82	32	4	24	40	1.73
87459--87506	9	5.3	9	80	14	55	39	2	0	58	1.10
92474--92514	22	2.0	20	90	9	64	78	2	12	7	1.06
93618--93713	36	2.6	37	81	3	115	32	20	8	38	1.83
93791--94005	63	3.4	62	76	14	247	28	18	13	40	1.88
93783--94278	129	3.8	131	86	3	596	27	19	12	39	1.89
93826--94309	66	7.4	66	80	8	481	25	20	13	40	1.89
94098--94215	36	3.4	35	68	15	102	24	20	13	41	1.88
94068--94179	31	3.5	31	70	13	91	23	20	14	41	1.88
97525--97564	16	2.5	16	100	0	80	40	32	17	10	1.83
97721--97805	14	6.4	14	72	20	65	16	10	11	61	1.57
97713--97766	24	2.2	24	96	0	99	14	11	12	61	1.58
97715--97805	28	3.4	26	81	11	78	15	10	13	60	1.59
97999--98063	24	2.8	23	93	4	112	9	7	18	64	1.46
104032--104084	21	2.5	21	96	3	97	0	18	56	24	1.42
104029--104084	5	10.6	5	94	5	85	0	19	55	25	1.43
104183--104367	41	4.7	41	78	14	217	37	23	21	17	1.94
104258--104326	19	3.5	19	73	11	75	37	21	21	18	1.94
104276--104354	22	3.7	22	73	10	83	36	24	21	17	1.94
104270--104428	20	7.8	20	74	8	104	38	23	22	16	1.93
104253--104411	41	3.9	41	89	4	173	36	23	21	18	1.95
104339--104453	61	1.9	61	92	0	194	38	24	20	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104311--104429	20	5.8	20	75	7	114	38	24	21	15	1.92
104478--104530	19	2.8	19	94	0	88	35	16	26	20	1.94
108957--109103	50	2.9	50	88	3	206	40	14	16	28	1.88
116893--117010	44	2.7	44	93	1	193	41	1	5	51	1.34
116876--117017	44	3.3	44	82	11	168	42	1	4	52	1.29
118263--118396	71	1.9	71	96	3	252	20	7	16	55	1.64
132310--132369	30	2.0	30	93	0	102	31	21	25	21	1.98

Tables:   1

The End!