Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001335.1 Hibiscus syriacus cultivar Beakdansim tig00002608_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78298

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1289--1324
14
2.3
17
86
13
51
22
22
2
52
1.59
5322--5402
23
3.5
24
73
17
89
35
25
22
16
1.94
5820--5878
27
2.1
28
93
3
102
32
16
3
47
1.64
6482--6519
20
1.9
20
89
10
60
21
34
31
13
1.91
9795--9849
28
2.0
28
100
0
110
40
7
20
32
1.80
15689--15743
29
1.9
28
88
3
83
29
27
12
30
1.93
17197--17283
35
2.5
34
80
12
97
55
10
8
26
1.61
17495--17557
6
10.5
6
75
0
54
15
36
17
30
1.91
17495--17560
21
3.1
21
84
0
96
15
36
18
30
1.91
17502--17542
9
4.6
9
87
0
55
12
36
19
31
1.89
20487--20819
111
3.0
111
95
0
594
44
11
8
36
1.70
20945--20986
10
4.2
10
79
11
50
40
0
26
33
1.56
25450--25921
235
2.0
234
91
1
766
30
19
12
37
1.88
26491--26590
39
2.6
39
92
4
168
28
24
31
17
1.97
27996--28474
226
2.1
227
86
7
670
32
19
12
36
1.88
29758--29910
80
1.9
80
90
0
243
48
5
26
18
1.71
37573--37648
31
2.5
31
84
0
107
11
27
34
26
1.91
39394--39445
2
26.0
2
100
0
104
50
0
0
50
1.00
42354--42395
15
2.9
15
75
3
50
26
0
0
73
0.83
48317--48358
21
2.0
21
85
0
57
19
7
14
59
1.57
48963--49041
39
2.0
39
85
4
106
25
30
17
26
1.97
54579--54612
16
2.1
16
88
0
50
50
0
2
47
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54653--54686
16
2.0
18
88
11
54
26
2
5
64
1.30
55154--55401
130
1.9
130
93
0
424
36
12
14
36
1.85
55796--55869
35
2.1
35
89
0
112
36
1
21
40
1.62
57699--58039
78
4.3
77
76
9
248
29
16
17
36
1.91
57810--58039
81
2.9
80
83
3
259
30
16
16
37
1.90
59917--59988
29
2.4
29
82
11
76
4
18
2
75
1.09
59944--59999
20
2.8
20
71
13
53
5
16
1
76
1.05
62501--62562
22
2.9
22
83
7
74
14
20
30
33
1.93
63511--63569
27
2.1
28
87
3
84
42
20
15
22
1.89
64191--64318
57
2.2
57
95
0
229
34
19
7
38
1.81
65151--65226
30
2.5
31
78
8
84
18
26
25
30
1.98
67259--67293
17
2.1
17
100
0
70
34
22
11
31
1.90
69109--69176
24
2.9
23
89
6
100
42
19
13
25
1.87
73328--73634
157
2.0
155
91
3
501
35
31
12
19
1.90
73661--73748
24
3.7
24
78
0
77
46
18
9
26
1.78
75360--75404
22
2.0
22
100
0
90
35
17
8
37
1.81
77242--77282
17
2.4
17
88
8
57
73
0
7
19
1.07

Tables:   1

The End!