genome.fa.s1337.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001337.1 Hibiscus syriacus cultivar Beakdansim tig00002611_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79935

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265--324	11	5.8	11	73	15	65	61	0	1	36	1.06
746--842	7	14.0	7	72	20	53	46	30	0	22	1.52
741--839	14	7.2	13	73	18	67	47	30	0	22	1.51
741--842	21	4.9	22	75	17	92	46	31	0	22	1.52
2885--2912	14	2.0	14	100	0	56	14	28	35	21	1.92
5859--5916	18	3.3	18	71	9	66	44	5	13	36	1.66
5854--5921	34	2.0	34	100	0	136	44	5	14	35	1.70
10788--10843	3	18.0	3	85	14	78	33	0	0	66	0.92
10776--10839	15	4.4	15	74	22	57	32	0	0	67	0.91
10782--10839	9	6.7	9	78	21	54	32	0	0	67	0.91
12182--12235	22	2.4	21	81	9	54	42	1	0	55	1.10
12262--12529	140	1.9	140	80	6	312	38	7	7	45	1.61
13044--13076	14	2.3	15	89	5	50	33	9	3	54	1.47
14606--14660	14	3.9	14	83	4	65	23	14	9	52	1.70
19595--19814	114	1.9	114	91	0	359	32	14	21	30	1.93
21884--22039	54	2.9	53	89	1	222	37	17	22	23	1.94
22406--22460	22	2.5	22	84	0	74	34	14	12	38	1.84
22899--23410	113	4.5	113	92	1	794	37	13	19	28	1.90
23681--23744	3	20.7	3	87	12	94	32	0	0	67	0.91
25149--25416	140	1.9	140	80	6	312	39	7	7	45	1.61
26109--26152	14	3.1	14	83	0	52	13	9	15	61	1.56
28062--28102	21	2.0	21	90	0	64	4	39	12	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32786--32826	21	2.0	21	95	0	73	53	43	0	2	1.13
33622--33661	11	3.5	11	86	10	53	60	2	2	35	1.24
39107--39287	41	4.3	41	73	13	136	29	20	16	33	1.95
39339--39380	20	2.1	20	90	0	66	23	19	14	42	1.87
42848--42897	22	2.2	24	82	7	59	32	0	8	60	1.26
42931--42983	27	2.0	27	96	0	97	33	0	24	41	1.55
50229--50271	2	21.5	2	100	0	86	51	0	0	48	1.00
51508--51554	3	16.0	3	79	20	55	38	0	0	61	0.96
51508--51553	14	3.4	14	88	11	69	39	0	0	60	0.97
53723--53755	17	2.0	17	88	5	50	18	3	0	78	0.87
55674--55717	14	3.2	13	81	12	52	79	2	13	4	0.98
55674--55742	12	5.5	12	73	14	50	76	2	15	4	1.06
55666--55742	35	2.2	35	81	9	86	76	2	16	3	1.05
56788--56865	32	2.5	32	81	8	97	29	12	23	34	1.92
57089--57393	64	4.8	64	90	2	454	34	19	11	34	1.88
57089--57391	127	2.4	127	89	3	457	33	19	11	34	1.88
57611--57943	156	2.1	156	88	1	479	37	20	15	26	1.92
58062--58318	85	3.0	84	83	2	325	33	19	18	28	1.96
59626--59672	13	3.7	13	81	13	53	70	0	2	27	0.99
59639--59682	17	2.6	17	82	7	54	72	0	0	27	0.85
59656--59697	19	2.2	19	86	0	57	61	0	4	33	1.17
59628--59680	25	2.1	26	86	6	74	71	0	1	26	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59925--59972	23	2.0	24	84	11	64	70	0	2	27	0.98
60388--60480	37	2.5	37	82	0	105	32	12	12	41	1.81
61267--61312	20	2.3	20	100	0	92	28	13	32	26	1.93
61287--62428	106	10.8	106	93	0	1827	22	17	25	34	1.96
63373--63428	22	2.6	21	80	8	67	26	8	25	39	1.85
64049--64098	16	3.4	14	86	10	64	0	14	6	80	0.90
64049--64098	15	3.3	15	83	5	57	0	14	6	80	0.90
67436--67472	19	1.9	19	89	10	58	67	0	24	8	1.17
68751--68805	12	4.4	13	77	11	53	72	0	1	25	0.94
68735--68830	47	2.0	47	82	7	115	67	1	4	27	1.15
68735--68808	17	4.6	16	72	17	55	71	1	2	24	1.07
68833--68900	28	2.5	28	72	13	70	64	5	2	26	1.30
68997--69021	2	12.5	2	100	0	50	52	0	0	48	1.00
69011--69059	25	2.0	24	84	15	64	63	2	6	28	1.30
69516--69617	37	2.8	37	87	0	132	31	13	14	40	1.85
76680--76723	21	2.1	21	82	0	52	9	43	15	31	1.79
79473--79505	13	2.3	15	90	10	52	39	0	0	60	0.97

Tables:   1

The End!