genome.fa.s1338.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001338.1 Hibiscus syriacus cultivar Beakdansim tig00002612_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58465

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4366--4607	77	3.1	79	78	7	237	29	16	17	37	1.91
4361--4654	156	1.9	153	80	7	344	29	15	17	37	1.91
4398--4654	77	3.3	77	76	7	225	29	15	17	38	1.90
9132--9182	22	2.3	22	83	6	59	23	25	19	31	1.98
10114--10178	27	2.3	28	86	5	87	44	20	13	21	1.86
10798--10925	57	2.2	57	95	0	229	34	19	7	38	1.81
11753--11828	30	2.5	31	78	8	84	18	26	25	30	1.98
13854--13888	17	2.1	17	100	0	70	34	22	11	31	1.90
15742--15809	24	2.9	23	89	6	100	42	19	13	25	1.87
19954--20260	157	2.0	155	92	3	510	35	31	12	19	1.89
20305--20350	24	1.9	24	95	0	83	47	21	13	17	1.81
21985--22029	22	2.0	22	100	0	90	35	17	8	37	1.81
23688--23722	18	1.9	18	88	0	52	54	2	20	22	1.58
23898--23935	17	2.3	17	90	4	60	76	0	10	13	1.02
29932--29988	3	18.3	3	76	7	51	29	0	1	68	1.00
29945--30002	31	1.9	30	89	3	89	25	0	3	70	1.03
29941--30005	28	2.3	28	84	7	78	27	0	3	69	1.03
31359--31494	32	4.2	32	95	0	236	31	16	2	48	1.61
32482--32508	14	1.9	14	100	0	54	37	3	0	59	1.15
36427--36482	22	2.7	20	78	13	60	37	21	25	16	1.93
37527--37574	24	2.0	24	100	0	96	25	29	16	29	1.97
40822--40908	43	2.0	43	97	0	165	34	9	10	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42263--42315	10	4.9	10	76	17	52	67	3	0	28	1.07
42275--42299	13	1.9	13	100	0	50	72	0	0	28	0.86
42263--42310	23	2.0	23	88	8	69	68	4	0	27	1.07
45433--45471	18	2.2	18	100	0	78	43	5	17	33	1.72
47164--47218	24	2.3	24	87	0	74	12	14	16	56	1.68
48360--48390	16	1.9	16	100	0	62	6	12	22	58	1.58
50403--50470	33	2.1	33	88	5	102	35	1	5	57	1.32
50804--50840	18	2.1	18	89	0	56	45	16	8	29	1.76
52835--52897	28	2.2	27	81	10	72	65	1	0	33	1.03

Tables:   1

The End!