Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001339.1 Hibiscus syriacus cultivar Beakdansim tig00002613_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92581

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4522--4591
25
2.8
26
73
4
63
45
0
0
54
0.99
5242--5314
36
2.0
36
82
10
87
47
2
2
46
1.31
5992--6026
16
2.1
17
89
5
54
48
2
5
42
1.41
9297--9369
19
3.7
19
82
12
85
27
17
34
20
1.95
9993--10550
135
4.1
135
87
3
748
40
10
20
29
1.85
10034--10519
45
10.8
45
87
2
681
40
10
19
28
1.85
14991--15024
12
2.8
12
90
4
50
47
5
8
38
1.59
23113--23147
3
11.7
3
100
0
70
31
0
0
68
0.90
28557--28601
21
2.1
22
84
12
58
51
0
0
48
1.00
28681--28721
20
2.2
19
91
8
66
48
9
21
19
1.77
28875--28905
15
2.1
15
93
0
53
54
0
0
45
0.99
34542--34592
22
2.4
21
76
3
57
39
1
7
50
1.42
41218--41297
20
3.9
20
79
6
79
16
25
35
23
1.95
47737--47783
19
2.7
17
75
15
51
70
2
8
19
1.24
47737--47836
35
2.9
34
70
16
89
70
1
10
19
1.21
47846--47888
11
3.4
14
73
26
51
72
0
4
23
1.04
49022--49072
3
17.3
3
77
18
54
72
0
1
25
0.95
49067--49339
36
7.4
35
70
15
151
44
7
4
43
1.51
50144--50660
85
6.1
85
86
2
670
26
19
21
33
1.97
50144--50660
170
3.1
170
88
2
742
26
19
21
33
1.97
51046--51199
65
2.4
64
84
5
195
30
24
18
26
1.98
60149--60197
19
2.6
19
84
9
57
24
28
20
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62192--62419
94
2.6
83
77
15
242
33
19
17
30
1.94
62240--62418
94
1.9
94
91
0
295
33
18
16
31
1.93
66055--66090
4
9.0
4
87
0
54
69
5
0
25
1.10
66055--66090
12
3.0
12
95
0
63
69
5
0
25
1.10
66229--66290
5
12.4
5
81
13
56
74
0
6
19
1.03
67465--67508
16
2.7
15
83
13
52
70
0
2
27
0.99
67533--67603
37
1.9
36
88
2
106
43
7
2
46
1.45
67552--67694
49
3.1
49
75
11
126
39
5
3
51
1.43
67607--67766
40
4.1
38
84
7
187
43
6
4
46
1.49
67813--67873
2
30.5
2
100
0
122
49
0
0
50
1.00
67861--67937
32
2.4
32
86
2
109
45
6
2
45
1.43
67623--67903
36
7.2
39
73
18
169
44
5
3
46
1.44
67623--67903
40
7.1
40
73
17
132
44
5
3
46
1.44
68001--68049
16
3.0
16
85
8
64
77
6
0
16
0.96
69811--69998
60
3.1
60
80
7
222
33
27
2
36
1.71
70162--70307
60
2.4
60
77
8
163
45
3
18
32
1.66
79371--79397
2
13.5
2
100
0
54
51
0
0
48
1.00
82134--82981
4
212.5
4
98
0
1628
49
25
0
24
1.55

Tables:   1

The End!