Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000134.1 Hibiscus syriacus cultivar Beakdansim tig00000245_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105876

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
712--741
3
10.3
3
92
7
53
0
0
33
66
0.92
859--937
40
2.0
40
87
5
115
43
17
15
24
1.87
1060--1125
18
3.7
18
87
0
96
42
16
10
30
1.82
1222--1259
20
2.0
19
85
10
51
55
10
5
28
1.56
2614--2687
30
2.5
30
80
4
87
31
13
5
50
1.64
9423--9448
13
2.0
13
100
0
52
46
0
0
53
1.00
9587--9624
19
2.0
19
89
0
58
34
31
10
23
1.89
9672--9698
14
1.9
14
100
0
54
25
0
29
44
1.54
32092--32156
33
2.0
33
87
0
94
23
15
7
53
1.67
33728--33870
69
2.1
69
93
0
241
25
14
20
39
1.91
35174--35198
2
12.5
2
100
0
50
52
0
48
0
1.00
35819--35955
39
3.5
39
84
4
177
19
18
21
40
1.91
40807--41002
96
2.1
96
93
2
333
45
12
17
24
1.82
42337--42378
16
2.6
16
85
7
50
47
0
2
50
1.14
42448--42488
18
2.3
18
80
15
50
53
0
0
46
1.00
43609--43673
31
2.0
33
85
5
89
44
0
18
36
1.50
43993--44042
25
2.0
25
84
0
64
22
12
6
60
1.53
44548--44578
16
1.9
16
100
0
62
80
12
6
0
0.89
47925--47999
20
3.8
20
89
3
107
28
21
34
16
1.94
48023--48081
21
2.7
22
87
10
77
20
18
37
23
1.94
48305--48344
21
1.9
21
94
0
71
50
7
10
32
1.64
51472--51520
21
2.4
21
89
3
73
24
22
30
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52371--52445
33
2.3
34
84
13
95
49
0
0
50
1.00
52371--52451
38
2.3
34
83
14
101
49
0
0
50
1.00
52547--52622
30
2.6
29
80
10
91
22
35
10
31
1.88
54125--54225
3
33.7
3
87
0
148
34
3
0
61
1.15
54126--54225
27
3.7
27
95
0
173
35
4
0
61
1.15
55549--55586
19
2.1
19
95
5
69
18
5
5
71
1.25
56334--56383
18
2.8
17
79
11
55
24
0
2
74
0.93
56374--56410
15
2.7
15
88
12
53
24
5
8
62
1.44
66998--67072
10
7.1
10
76
20
73
82
0
14
2
0.77
67002--67067
24
2.8
23
78
13
80
81
0
15
3
0.80
67005--67074
11
5.8
12
77
15
58
80
0
17
2
0.84
66996--67072
38
2.0
39
82
7
95
81
0
15
2
0.79
68168--68842
83
8.2
83
92
1
1097
29
14
20
35
1.92
68152--68800
165
3.9
165
95
1
1079
30
14
19
35
1.92
68168--68842
248
2.7
248
92
1
1097
29
14
20
35
1.92
69465--70451
113
8.8
113
94
1
1605
37
13
19
29
1.90
70704--70798
3
31.7
3
86
0
136
34
4
0
61
1.16
70705--70807
27
3.8
27
89
2
154
36
3
0
59
1.16
72126--72163
19
2.1
19
95
5
69
18
5
5
71
1.25
89595--89637
16
2.9
15
86
6
52
62
0
13
23
1.31
90072--90118
3
16.0
3
95
4
87
65
0
0
34
0.93
94567--94646
29
2.8
30
90
7
130
37
16
13
32
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99292--99371
29
2.8
30
86
7
121
38
16
12
32
1.86

Tables:   1

The End!