genome.fa.s1340.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001340.1 Hibiscus syriacus cultivar Beakdansim tig00002614_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68631

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1977--2086	36	3.1	36	80	3	109	20	23	14	41	1.89
2011--2096	36	2.4	36	84	3	102	23	23	13	39	1.90
1900--2225	66	4.9	65	69	15	191	26	19	14	40	1.89
2258--2657	131	3.1	131	89	2	576	25	30	17	27	1.97
10807--10914	56	1.9	57	86	5	157	29	22	20	27	1.98
12329--12404	31	2.5	31	93	0	125	22	21	19	36	1.95
12936--12986	19	2.7	19	96	0	93	33	17	17	31	1.94
13033--13073	20	2.0	20	85	0	55	39	17	7	36	1.77
16576--16613	14	2.7	14	100	0	76	63	0	36	0	0.95
19241--19308	31	2.2	31	83	0	82	25	13	20	41	1.88
19241--19321	31	2.6	31	82	0	81	25	13	22	38	1.91
19917--19967	20	2.5	20	87	0	75	33	15	15	35	1.90
21150--21242	2	45.0	2	87	6	114	51	2	2	44	1.25
25493--25533	8	5.2	8	82	5	57	34	0	29	36	1.58
25604--26104	128	3.9	128	97	0	939	24	25	18	31	1.97
26497--26601	33	3.2	32	81	11	131	38	2	4	54	1.36
27125--27194	21	3.3	20	90	5	95	18	27	35	18	1.94
27733--27792	29	2.0	31	90	6	97	35	6	16	41	1.75
27857--27922	19	3.6	18	83	6	78	39	10	15	34	1.82
28098--28137	20	1.9	21	85	10	55	37	37	10	15	1.80
31209--31268	29	2.0	31	90	6	97	35	6	16	41	1.75
31333--31399	19	3.5	19	87	0	89	40	10	14	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31575--31614	20	1.9	21	85	10	55	37	37	10	15	1.80
33201--33275	31	2.4	33	77	11	84	60	1	0	38	1.06
33198--33286	34	2.7	31	81	6	97	59	2	0	38	1.10
48121--48190	25	2.8	26	73	4	63	45	0	0	54	0.99
48777--48850	37	2.0	36	82	12	89	48	4	1	45	1.29
49530--49564	16	2.1	17	89	5	54	48	2	5	42	1.41
52822--52872	19	2.7	19	93	6	86	25	17	35	21	1.95
52822--52888	19	3.3	20	87	10	68	28	16	34	20	1.95
53555--54043	45	10.9	45	86	0	654	41	9	19	29	1.82
65288--65369	22	3.7	22	70	3	58	26	19	23	30	1.98
66594--66625	3	10.7	3	100	0	64	31	0	0	68	0.90

Tables:   1

The End!