genome.fa.s1342.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001342.1 Hibiscus syriacus cultivar Beakdansim tig00002619_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112458

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4795--4846	23	2.3	23	86	6	79	15	23	26	34	1.94
7416--7524	58	1.9	57	82	1	137	31	12	18	37	1.88
8343--8525	60	3.0	60	80	7	201	44	4	19	31	1.72
9220--9293	30	2.4	30	84	4	94	29	6	9	54	1.58
9845--9885	14	2.9	14	89	7	57	24	0	26	48	1.51
9966--10010	21	2.1	21	87	0	63	28	4	20	46	1.69
10068--10123	29	2.0	28	85	3	76	26	1	30	41	1.66
10081--10213	65	2.0	65	92	0	221	29	1	24	44	1.63
10206--10253	14	3.6	14	80	8	55	31	2	22	43	1.65
10217--10319	7	14.3	7	69	19	52	29	2	21	46	1.66
10227--10274	21	2.3	21	85	0	60	31	4	22	41	1.73
10249--10291	15	3.0	14	83	6	59	30	4	20	44	1.72
10230--10304	15	4.5	17	70	23	54	32	4	18	45	1.68
10243--10321	31	2.7	29	76	18	81	29	2	20	48	1.63
10532--10936	82	4.9	82	81	1	398	31	16	18	33	1.93
10563--10771	41	5.1	41	68	14	126	33	19	18	29	1.95
10505--10936	163	2.6	162	77	3	443	31	15	18	34	1.92
16148--16192	22	2.0	22	83	12	56	44	15	8	31	1.77
16621--16727	43	2.5	42	80	3	124	30	10	18	40	1.84
17986--18078	48	1.9	48	97	0	177	52	10	7	29	1.63
23261--23335	32	2.4	32	75	2	80	32	32	20	16	1.94
24226--24370	29	5.0	29	91	0	218	46	19	2	31	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24354--24493	58	2.4	58	95	0	244	47	12	6	34	1.66
24387--24487	29	3.4	29	63	11	71	45	12	6	34	1.69
24536--24578	17	2.5	17	96	0	77	20	23	37	18	1.94
28388--28446	21	2.8	21	89	5	84	20	5	23	50	1.67
30978--31053	40	1.9	40	91	0	125	22	10	17	50	1.76
32954--33050	31	3.1	31	80	2	115	37	22	16	23	1.94
35781--35812	2	16.0	2	100	0	64	50	0	0	50	1.00
38307--38403	31	3.1	31	85	2	133	39	23	14	22	1.91
42189--42215	13	2.1	13	100	0	54	37	14	25	22	1.93
43961--44020	31	1.9	30	93	0	84	13	38	10	38	1.78
44354--44406	24	2.2	24	96	0	97	20	32	0	47	1.51
45854--45881	2	14.0	2	100	0	56	50	0	0	50	1.00
48928--48995	27	2.6	27	86	6	86	35	19	11	33	1.88
56570--56632	31	2.0	31	84	0	81	23	22	9	44	1.82
60401--60453	27	1.9	28	88	11	83	24	16	16	41	1.89
65126--65178	27	1.9	28	88	11	83	24	16	16	41	1.89
70499--70556	29	2.0	29	86	6	82	17	15	34	32	1.91
71286--71321	2	18.0	2	100	0	72	50	0	0	50	1.00
71321--71346	2	13.0	2	100	0	52	0	0	50	50	1.00
73737--73763	13	2.1	13	100	0	54	22	7	7	62	1.46
73804--73829	10	2.6	10	100	0	52	50	19	19	11	1.77
84247--84294	20	2.4	20	75	0	51	22	33	27	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88281--88379	33	3.0	32	85	5	135	29	21	16	33	1.95
88353--88706	78	4.5	78	81	0	456	21	21	17	39	1.92
90934--90990	20	2.8	20	89	0	78	36	10	17	35	1.84
101361--101406	20	2.3	19	85	14	58	50	8	15	26	1.73

Tables:   1

The End!