genome.fa.s1343.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001343.1 Hibiscus syriacus cultivar Beakdansim tig00002621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86218

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67--130	26	2.4	26	84	7	76	21	10	20	46	1.81
3055--3092	19	2.0	19	85	10	51	31	0	2	65	1.06
4841--4910	27	2.6	27	78	17	74	61	5	2	30	1.34
7731--7774	16	2.8	16	89	0	70	36	29	13	20	1.91
15022--15170	56	2.6	58	83	4	194	40	4	21	33	1.72
15073--15156	30	2.9	28	71	15	73	39	4	21	34	1.74
15026--15202	59	3.1	58	80	5	162	41	3	21	33	1.70
15311--15379	28	2.4	30	78	11	81	50	8	10	30	1.66
15425--15460	2	18.0	2	100	0	72	50	0	0	50	1.00
33860--34308	229	2.0	226	94	2	783	45	8	7	39	1.61
34541--34587	20	2.4	19	86	10	67	55	8	17	19	1.67
36818--36882	21	3.1	21	80	6	69	40	15	29	15	1.88
36916--36976	32	1.9	32	89	0	95	29	0	47	22	1.52
38769--38817	19	2.6	19	93	0	80	30	2	10	57	1.43
38989--40596	199	8.2	199	95	3	2962	37	15	15	32	1.88
40081--40596	178	2.8	178	92	6	816	37	15	15	31	1.88
42049--42116	21	3.4	18	69	21	55	36	8	35	19	1.83
42049--42128	6	13.3	6	78	0	70	37	7	35	20	1.81
42064--42132	3	23.0	3	74	0	57	36	5	34	23	1.79
42049--42132	12	7.0	12	84	0	78	36	7	34	21	1.81
42049--42128	18	4.4	18	79	0	79	37	7	35	20	1.81
43600--43943	184	1.9	184	93	0	589	35	14	16	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46408--46472	25	2.6	25	80	0	85	35	9	13	41	1.77
46759--46822	23	2.8	23	87	0	92	35	6	20	37	1.78
46759--46831	23	3.2	23	82	7	85	34	5	20	39	1.76
47525--47682	42	3.8	42	94	1	282	14	18	19	46	1.83
47870--47972	24	4.4	22	71	23	68	47	0	0	50	1.14
48004--48071	20	3.5	20	75	18	63	50	0	1	48	1.10
48016--48126	25	5.0	22	67	23	65	48	0	1	49	1.11
47976--48054	10	8.0	10	68	18	58	46	0	1	51	1.08
48003--48084	39	2.1	40	86	11	116	51	0	1	47	1.08
47881--48054	29	5.8	31	70	15	102	46	0	1	51	1.12
48220--48258	20	2.0	20	84	0	51	33	17	7	41	1.79
48232--48291	15	4.1	15	82	4	77	33	20	8	38	1.82
48232--48291	29	2.0	30	96	3	113	33	20	8	38	1.82
50261--50298	17	2.2	17	100	0	76	28	26	26	18	1.98
53493--53544	15	3.2	17	72	22	58	34	23	0	42	1.54
58101--58153	26	2.0	27	82	10	65	45	1	1	50	1.23
58155--58210	25	2.3	24	71	3	58	46	1	3	48	1.30
61577--61620	22	2.0	22	86	0	61	27	20	11	40	1.86
62508--62541	2	17.0	2	100	0	68	50	0	0	50	1.00
63526--63556	16	1.9	16	100	0	62	58	22	0	19	1.40
63910--64097	37	5.3	37	71	19	139	30	15	9	44	1.78
64030--64116	37	2.3	37	84	2	102	32	20	8	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64122--64200	37	2.2	36	81	2	95	31	17	6	44	1.74
63919--64268	103	3.4	103	89	1	497	30	17	9	42	1.81
64354--64523	66	2.6	66	83	2	218	30	21	12	35	1.90
64525--64662	36	3.7	37	75	7	127	28	18	13	39	1.88
64530--64701	39	4.5	37	76	7	123	28	18	13	39	1.88
64567--64721	39	4.0	39	80	5	145	30	18	14	37	1.90
64723--64872	51	2.9	51	85	6	176	34	10	15	40	1.80
64718--64934	52	4.1	52	80	7	152	30	8	16	43	1.78
65033--65125	41	2.2	42	80	1	98	30	20	17	32	1.95
65230--65382	59	2.6	59	87	2	200	30	25	14	30	1.95
65385--65490	42	2.5	42	80	4	117	26	23	19	30	1.98
65591--65803	100	2.2	97	86	5	290	32	19	20	27	1.97
66297--66334	3	12.7	3	100	0	76	31	0	0	68	0.90
67814--67922	55	2.0	55	87	0	155	20	10	9	60	1.55
70787--70829	16	2.7	16	96	0	77	53	0	11	34	1.37
78131--78184	19	2.8	19	75	10	65	25	18	27	27	1.98
81648--81691	21	2.1	21	100	0	88	40	4	13	40	1.65
85713--85823	53	2.1	53	96	0	204	51	0	1	46	1.11

Tables:   1

The End!