genome.fa.s1344.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001344.1 Hibiscus syriacus cultivar Beakdansim tig00002622_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107180

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4257--4287	2	15.5	2	100	0	62	48	0	0	51	1.00
4786--4849	2	32.5	2	96	3	121	50	0	0	50	1.00
9249--9281	2	16.5	2	100	0	66	48	0	0	51	1.00
10042--10088	18	2.8	18	78	9	55	42	0	2	55	1.12
10084--10118	17	2.0	18	88	5	54	31	0	2	65	1.07
11824--11871	21	2.3	21	85	0	60	22	41	14	20	1.89
11875--11989	21	5.5	21	86	10	164	18	33	26	21	1.96
11881--11989	42	2.6	42	95	2	193	18	33	25	22	1.97
12513--12610	34	2.9	34	82	0	124	57	3	2	37	1.26
13015--13338	128	2.5	127	95	0	576	36	20	20	22	1.95
15748--15780	6	5.5	6	100	0	66	84	0	15	0	0.61
21473--21567	49	1.9	49	91	0	154	17	36	30	14	1.90
26264--26312	6	8.3	6	97	2	91	67	0	0	32	0.91
27994--28034	18	2.3	19	87	8	59	29	0	7	63	1.21
31835--31869	2	17.5	2	93	0	61	0	51	0	48	1.00
36183--36229	2	23.5	2	86	0	67	44	2	2	51	1.25
37768--37821	23	2.3	23	96	0	99	59	1	0	38	1.08
38675--38718	13	3.5	13	90	6	72	18	52	15	13	1.75
38738--38835	2	51.0	2	74	8	78	51	0	0	48	1.00
38735--38824	31	2.9	30	83	6	117	50	0	0	50	1.00
38853--38887	12	2.9	12	95	0	61	28	51	11	8	1.67
54607--54631	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65886--65974	18	4.8	19	67	9	60	51	1	0	47	1.08
66814--66855	21	2.0	22	90	4	68	35	16	23	23	1.95
70452--70501	24	2.1	24	84	0	64	30	26	16	28	1.96
78778--78833	15	3.6	15	79	9	67	42	12	12	32	1.80
78781--78831	17	3.1	17	77	11	61	43	11	9	35	1.75
79231--79285	13	4.2	13	75	13	58	49	12	3	34	1.59
79271--79369	33	3.0	33	94	1	164	45	15	7	32	1.73
79364--79403	21	1.9	21	94	0	71	47	7	15	30	1.72
87935--87993	25	2.3	26	72	18	61	47	1	5	45	1.34
89338--89452	43	2.7	42	85	2	149	20	13	16	48	1.80
89652--89760	52	2.1	52	80	13	118	52	0	0	45	1.13
89731--89795	28	2.2	28	81	10	69	52	0	1	46	1.10
89736--89786	19	2.7	19	79	8	52	56	0	1	41	1.10
89805--89849	23	2.0	23	86	0	63	53	2	2	42	1.25
90149--90183	14	2.5	14	90	0	52	31	20	14	34	1.92
91643--91697	25	2.2	25	87	3	76	18	18	21	41	1.90
94174--94231	20	2.9	21	79	7	66	22	18	18	39	1.92
94286--94461	66	2.6	65	85	10	232	53	15	1	28	1.49
95887--96142	60	4.2	60	80	7	295	20	14	23	41	1.89
95887--96153	20	13.3	20	78	10	253	20	14	23	41	1.89
96589--96627	20	2.0	19	85	5	51	46	0	5	48	1.24
96820--96849	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99115--99166	21	2.5	21	81	3	61	38	19	25	17	1.93
99155--99208	20	2.7	20	97	0	99	31	24	18	25	1.97
99821--99862	19	2.2	19	91	0	66	52	26	16	4	1.63
99858--99928	19	3.7	19	86	3	106	12	19	21	46	1.83
99858--100023	20	9.1	19	74	16	136	12	22	21	43	1.86
99911--99998	33	2.6	33	92	1	140	11	25	25	38	1.89
102017--102134	42	2.8	41	78	10	105	22	33	18	24	1.97
103476--103511	14	2.6	14	95	0	63	30	0	25	44	1.54
103650--103689	20	2.0	20	95	0	71	52	20	15	12	1.74
103690--103840	19	8.7	19	62	21	62	15	21	20	43	1.88
103694--103820	33	3.9	32	84	8	175	14	21	19	44	1.87
103687--103819	66	2.0	66	94	0	230	16	21	19	42	1.89
106293--106345	23	2.2	24	86	3	72	35	20	20	22	1.96

Tables:   1

The End!