genome.fa.s1345.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001345.1 Hibiscus syriacus cultivar Beakdansim tig00002623_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74002

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1449--1507	25	2.3	26	82	2	75	35	15	6	42	1.73
2934--2975	15	2.9	15	75	17	52	64	9	4	21	1.42
3084--3128	12	3.7	12	77	16	56	35	0	11	53	1.37
3129--3209	42	1.9	42	82	5	101	48	12	3	35	1.59
3346--3395	19	2.5	19	81	12	57	48	0	0	52	1.00
3598--3659	27	2.3	28	80	8	74	50	3	1	45	1.27
3598--3646	18	2.7	18	75	9	55	51	2	2	44	1.24
3603--3722	64	1.9	63	84	5	161	46	5	5	42	1.49
5024--5050	13	2.1	13	100	0	54	44	7	7	40	1.60
13345--13369	13	1.9	13	100	0	50	48	8	0	44	1.32
16544--16575	2	16.0	2	100	0	64	50	0	0	50	1.00
18290--19806	755	2.0	756	97	0	2874	29	15	20	34	1.94
26380--26441	23	2.9	21	85	7	81	20	35	25	17	1.95
26423--26462	21	1.9	21	89	0	62	25	40	25	10	1.86
28691--28726	16	2.2	16	95	0	63	44	0	30	25	1.54
29215--29261	20	2.3	20	100	0	94	19	34	25	21	1.96
36180--36359	4	44.5	4	96	2	333	49	24	1	25	1.57
37711--37735	13	1.9	13	100	0	50	16	48	16	20	1.82
42618--42647	13	2.3	13	100	0	60	16	46	23	13	1.82
45954--45982	15	1.9	15	100	0	58	13	41	24	20	1.89
47717--47783	2	33.5	2	100	0	134	49	0	0	50	1.00
48374--48866	131	3.7	133	88	2	726	33	10	16	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48374--48864	265	1.9	262	89	2	759	33	10	16	39	1.83
56304--56368	3	21.7	3	87	12	98	67	0	0	32	0.91
56407--56446	21	1.9	21	94	0	71	47	7	0	45	1.31
56448--56573	37	3.5	36	82	11	127	44	7	3	44	1.49
58227--58279	19	2.8	19	88	0	70	47	22	16	13	1.82
58269--58381	20	6.1	19	73	13	92	13	23	20	43	1.86
58291--58356	33	2.0	34	93	3	116	12	24	24	39	1.89
58269--58381	19	6.1	19	73	13	92	13	23	20	43	1.86
58436--58509	25	2.6	28	71	20	73	18	5	18	56	1.60
60068--60234	86	1.9	84	81	11	196	20	13	19	47	1.82
61936--61971	14	2.6	14	90	0	54	30	2	22	44	1.67
62078--62144	19	3.8	19	77	18	81	44	20	22	11	1.84
62149--62260	33	3.4	32	83	9	145	13	23	19	43	1.86
62196--62260	19	3.7	19	68	19	59	12	21	20	46	1.83
64551--64587	12	3.1	12	92	0	65	0	24	0	75	0.80
64551--64583	6	5.5	6	92	0	57	0	21	0	78	0.75
65602--65650	21	2.4	21	86	3	64	40	16	22	20	1.91
65639--65717	20	3.9	20	77	9	70	35	22	18	22	1.96
65659--65727	21	3.3	21	76	8	70	40	21	17	20	1.91
65941--66028	20	4.4	20	72	5	79	39	20	20	19	1.92
66059--66132	19	4.5	16	83	16	66	13	20	18	47	1.82
66055--66122	19	3.8	19	87	12	101	13	22	17	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67731--67791	21	2.9	21	73	9	61	19	13	45	21	1.84
68156--68288	20	7.5	18	70	23	86	42	22	21	13	1.87
68215--68304	14	5.8	14	71	21	72	46	23	18	11	1.81
68198--68320	33	3.8	33	91	2	194	45	24	18	11	1.82
68198--68320	65	1.9	66	91	5	205	45	24	18	11	1.82
68316--68379	19	3.6	19	76	20	84	14	20	20	45	1.85
68364--68417	20	2.8	19	86	5	72	16	24	24	35	1.95
68352--68417	19	3.4	19	81	4	78	15	22	24	37	1.92
68899--68943	18	2.5	18	88	0	72	13	15	44	26	1.83
70260--70318	20	3.0	20	87	0	73	42	22	18	16	1.89
70578--70620	21	2.0	21	100	0	86	18	13	44	23	1.86
70804--70855	20	2.6	20	93	0	86	25	21	28	25	1.99
70864--70917	20	2.7	20	97	0	99	25	18	24	31	1.97
70800--70920	61	2.0	61	86	0	170	23	17	23	34	1.96
70906--70960	21	2.6	21	97	0	101	14	27	20	38	1.91
70803--70938	61	2.2	61	81	2	157	22	19	24	33	1.97
73527--73565	12	3.4	12	82	13	55	25	43	23	7	1.80

Tables:   1

The End!