Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001346.1 Hibiscus syriacus cultivar Beakdansim tig00002624_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77735

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4371--4428
30
1.9
31
89
3
91
31
6
32
29
1.84
12102--12146
23
2.1
21
88
12
65
31
2
0
66
1.04
12085--12173
18
5.2
16
74
19
72
38
3
1
57
1.23
12132--12173
16
2.5
17
84
7
50
50
2
2
45
1.27
15828--15952
18
6.9
18
89
0
196
26
32
22
19
1.97
23118--23151
17
2.1
16
88
5
50
76
0
8
14
1.01
33250--33283
17
2.1
16
88
5
50
76
0
8
14
1.01
36998--37030
17
1.9
17
93
0
57
42
3
3
51
1.32
41341--41565
112
2.0
112
98
0
432
36
25
9
28
1.87
41776--41850
22
3.3
22
66
23
64
44
22
4
29
1.71
41764--41867
47
2.2
47
96
0
190
45
20
4
29
1.71
47747--47827
32
2.5
34
78
8
87
54
7
6
32
1.53
47746--47804
31
1.9
31
86
6
84
55
6
1
35
1.36
48231--48289
25
2.3
27
80
13
72
45
11
8
33
1.71
48880--48950
24
3.0
24
78
0
79
52
16
9
21
1.73
49665--49725
20
3.0
20
75
13
61
49
21
0
29
1.50
49673--49724
14
3.8
14
75
12
54
51
17
0
30
1.45
49666--49739
34
2.2
34
82
4
87
48
25
0
25
1.51
50185--50226
6
7.0
6
100
0
84
50
0
0
50
1.00
50529--50558
11
2.7
11
94
0
51
36
20
20
23
1.95
59000--59035
15
2.4
16
82
17
51
72
0
0
27
0.85
60119--60153
17
2.0
18
94
5
63
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60845--61030
77
2.4
76
80
5
203
44
11
8
36
1.70
72266--72316
22
2.4
22
83
9
61
56
3
3
35
1.36
72596--72651
2
28.5
2
96
3
105
50
0
0
50
1.00

Tables:   1

The End!