Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001347.1 Hibiscus syriacus cultivar Beakdansim tig00002625_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89292

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1361--1419
28
2.1
28
93
0
100
32
22
11
33
1.90
3137--3179
21
2.1
20
82
4
50
20
4
4
69
1.25
4486--4512
13
2.1
13
100
0
54
40
29
14
14
1.86
6312--6402
22
4.1
22
88
0
110
17
38
17
26
1.92
6863--6915
25
2.1
25
96
0
97
24
16
30
28
1.97
11131--11159
12
2.5
12
94
5
51
82
0
0
17
0.66
11738--11807
31
2.3
31
100
0
140
52
11
10
25
1.68
11993--12022
2
15.0
2
100
0
60
50
0
0
50
1.00
13070--13121
22
2.4
22
83
0
68
32
13
34
19
1.90
13690--13717
2
14.0
2
100
0
56
50
0
0
50
1.00
23130--23169
20
2.0
20
90
0
62
30
20
2
47
1.63
23381--23482
31
3.3
31
80
2
107
37
13
8
40
1.76
24504--24555
24
2.2
24
85
0
68
21
19
11
48
1.80
26602--26637
18
2.0
18
100
0
72
38
11
11
38
1.76
32429--32461
2
17.0
2
93
6
59
51
0
0
48
1.00
33239--33396
60
2.6
59
80
7
169
42
6
19
31
1.78
35255--35411
85
1.8
86
86
4
228
29
14
15
40
1.88
40945--40986
22
1.9
22
90
0
66
42
7
9
40
1.65
53837--53971
29
4.6
29
74
1
117
39
23
6
30
1.80
53998--54057
26
2.4
25
80
2
75
21
25
38
15
1.92
61379--61411
11
3.3
10
88
12
50
33
27
24
15
1.95
61383--61412
11
2.8
11
95
5
53
36
26
20
16
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73748--73787
20
2.0
21
85
5
55
35
5
0
60
1.19
74557--74609
21
2.5
22
78
6
65
3
24
1
69
1.15
75928--75981
27
1.9
29
88
7
85
27
1
5
64
1.26
76179--76227
26
1.9
26
83
4
64
57
10
8
24
1.59
76494--76569
31
2.5
30
82
6
91
43
6
19
30
1.76
81565--81597
18
1.9
18
88
11
52
66
0
0
33
0.92
81735--81761
14
1.9
14
100
0
54
44
33
0
22
1.53
84717--84783
34
2.0
32
85
5
89
32
10
8
47
1.69
84889--84975
34
2.8
30
76
15
97
43
8
10
37
1.68
84908--84979
34
2.2
32
87
7
101
50
6
8
34
1.60
87212--87340
31
4.3
31
82
6
142
27
17
17
37
1.92
87212--87356
57
2.4
59
79
14
140
26
17
17
37
1.93

Tables:   1

The End!