genome.fa.s1348.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001348.1 Hibiscus syriacus cultivar Beakdansim tig00002626_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109184

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2303--2330	2	14.0	2	100	0	56	50	0	0	50	1.00
8504--8564	22	2.8	22	89	0	95	24	24	16	34	1.95
8949--8994	22	2.1	22	95	0	83	36	15	21	26	1.93
8988--9041	21	2.6	21	93	0	90	25	16	22	35	1.95
9599--9713	18	5.9	18	78	15	122	29	30	20	20	1.97
9599--9718	40	3.0	40	96	0	213	30	29	20	20	1.98
10256--10327	20	3.6	20	94	0	126	25	22	19	33	1.97
13610--13634	11	2.3	11	100	0	50	8	32	0	60	1.26
14382--14420	18	2.2	17	90	4	60	30	0	0	69	0.89
14436--14500	25	2.6	24	76	9	76	35	7	0	56	1.28
17358--17425	5	13.8	5	72	17	54	77	1	2	17	0.96
17351--17432	19	4.2	19	73	18	62	75	1	4	18	1.04
17353--17425	9	8.7	9	74	18	68	78	1	2	17	0.95
17355--17431	24	3.0	25	81	14	79	77	1	3	16	0.98
17533--17602	30	2.3	30	80	4	79	62	2	10	24	1.40
17582--17606	13	1.9	13	100	0	50	64	0	12	24	1.27
17611--17640	16	1.9	15	93	6	51	80	0	13	6	0.91
17768--17806	2	19.5	2	100	0	78	48	0	0	51	1.00
20265--20513	37	6.8	37	73	14	169	37	14	18	30	1.90
20247--20466	102	2.1	104	88	2	336	36	14	19	30	1.91
20377--20513	39	3.6	37	85	5	166	37	15	18	28	1.91
20583--20687	36	2.9	36	74	2	104	40	14	14	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20524--20682	72	2.1	75	87	6	227	38	15	17	28	1.90
21782--22037	94	2.7	94	89	4	363	30	17	18	33	1.94
26521--26556	2	18.0	2	94	0	63	50	2	0	47	1.15
28140--28206	20	3.6	19	76	21	54	76	1	8	13	1.09
28147--28199	20	2.6	20	80	16	56	77	1	7	13	1.06
28261--28310	24	2.1	23	82	14	57	72	2	12	14	1.22
28293--28362	30	2.3	30	80	4	79	64	0	10	25	1.25
28342--28366	13	1.9	13	100	0	50	64	0	12	24	1.27
31017--31042	2	13.0	2	100	0	52	50	0	0	50	1.00
31981--32054	21	3.7	21	80	7	82	1	50	6	41	1.37
32096--32146	21	2.4	21	96	0	93	3	37	17	41	1.68
56887--56930	23	2.0	23	82	13	56	50	6	2	40	1.42
58022--58071	24	2.0	25	88	11	75	16	10	18	56	1.67
61557--61605	3	15.7	3	91	8	80	32	0	0	67	0.91
61547--61605	23	2.7	23	84	10	79	32	0	0	67	0.91
62964--63017	26	2.0	26	85	7	72	40	0	0	59	0.98
64815--64859	21	2.1	21	87	0	63	31	28	24	15	1.96
66550--66616	22	3.0	22	93	2	107	20	25	28	25	1.99
69757--69801	21	2.1	21	87	0	63	31	28	24	15	1.96
71494--71560	22	3.0	22	95	2	116	19	26	28	25	1.99
74421--74467	20	2.4	21	79	13	55	12	14	14	57	1.66
80475--80686	54	3.9	54	81	6	234	38	13	20	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80478--80682	108	1.9	107	83	5	261	38	13	20	27	1.90
81042--81157	22	5.4	22	81	6	139	35	18	10	36	1.85
81822--82388	74	7.7	74	93	0	954	27	19	20	32	1.97
82727--82759	16	2.1	16	94	0	57	24	0	3	72	0.98
84031--84103	23	3.2	23	72	12	62	30	6	2	60	1.37
84230--84258	2	14.5	2	100	0	58	48	0	0	51	1.00
90278--90403	47	2.8	45	87	8	175	30	23	7	38	1.83
90512--90640	59	2.2	59	88	0	186	28	25	17	27	1.98
100335--100368	6	5.7	6	100	0	68	0	0	64	35	0.94
101290--101356	20	3.3	20	75	4	80	44	17	19	17	1.87
101307--101382	21	3.7	21	76	3	91	42	18	23	15	1.89
101290--101380	41	2.2	41	100	0	182	41	18	21	17	1.90
101309--101443	41	3.3	41	81	6	123	38	21	20	19	1.94
101371--101485	20	5.7	19	78	11	86	34	24	17	23	1.96
101653--101696	22	2.0	22	95	0	79	20	45	15	18	1.85
101959--102017	20	3.0	20	87	0	73	16	18	22	42	1.89
103328--103372	18	2.5	18	88	0	72	26	44	15	13	1.83
103888--103945	14	3.9	14	79	16	71	48	24	17	10	1.78
103872--103962	32	2.8	33	94	3	166	47	21	18	12	1.81
105210--105340	19	7.7	19	64	23	85	43	19	22	14	1.87
105210--105336	33	3.8	33	87	4	193	43	18	22	14	1.87
105211--105343	66	2.0	66	95	0	239	42	18	22	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105497--105533	14	2.6	14	91	0	65	45	24	0	29	1.53
106878--106944	21	3.2	21	68	4	55	19	20	35	23	1.95
106878--107000	42	2.9	41	79	7	113	22	18	36	21	1.95
109015--109113	32	3.0	33	80	5	110	39	27	22	11	1.88
109085--109155	19	3.7	19	83	3	97	46	21	18	14	1.83

Tables:   1

The End!