genome.fa.s1349.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001349.1 Hibiscus syriacus cultivar Beakdansim tig00002627_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85988

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3465--3522	23	2.6	22	83	5	64	29	27	22	20	1.99
3474--3522	23	2.1	23	88	0	71	30	28	22	18	1.97
6178--6367	64	3.0	62	79	13	197	31	24	18	26	1.98
6208--6367	65	2.5	63	86	6	214	30	23	18	26	1.98
7472--7510	2	19.5	2	100	0	78	51	0	0	48	1.00
8608--8637	2	15.0	2	100	0	60	50	0	0	50	1.00
14589--14651	27	2.3	27	100	0	126	39	19	17	23	1.92
17729--17761	2	16.5	2	100	0	66	48	0	0	51	1.00
18315--18972	4	165.5	4	98	1	1288	24	0	25	50	1.50
20577--20614	16	2.4	16	100	0	76	34	26	21	18	1.96
20638--20670	17	2.0	17	88	5	50	30	9	27	33	1.88
26740--26773	16	2.1	17	88	5	52	35	0	0	64	0.94
27936--28023	27	3.3	27	100	0	176	42	0	22	35	1.54
29105--29220	42	2.8	42	94	0	205	17	18	19	44	1.87
29390--29440	21	2.3	23	86	10	70	50	0	0	49	1.00
29407--29501	22	4.0	23	73	20	70	50	1	0	48	1.07
29418--29571	31	5.1	30	73	23	121	46	0	1	51	1.13
29400--29639	59	3.8	64	68	22	166	47	0	1	50	1.17
29500--29546	24	2.0	23	83	4	58	40	0	2	57	1.11
29604--29772	90	1.9	85	80	10	189	50	4	0	44	1.22
29738--29810	23	3.0	26	72	24	68	52	0	2	45	1.15
29928--29992	30	2.2	30	91	2	105	35	15	4	44	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29928--30009	15	5.5	15	77	8	78	36	14	6	42	1.71
30358--30425	35	1.9	35	100	0	136	14	33	10	41	1.80
33415--33495	31	2.6	31	90	0	126	43	7	24	24	1.80
34331--34362	15	2.0	17	88	11	50	31	15	6	46	1.71
34461--34501	9	4.8	9	77	22	52	78	9	0	12	0.98
35666--35787	58	2.1	58	98	1	237	34	16	13	36	1.87
38869--38952	22	3.9	22	71	11	66	25	23	1	50	1.57
38895--38965	20	3.4	20	75	11	70	22	25	2	49	1.63
38847--38968	23	5.5	23	73	14	87	22	24	2	50	1.61
38853--38970	43	2.7	45	82	2	150	22	25	2	50	1.62
38897--39070	23	8.4	20	69	19	72	20	30	1	48	1.57
38970--39080	23	4.8	23	85	0	159	21	32	0	45	1.52
40673--40724	15	3.5	15	75	0	59	26	3	23	46	1.69
40845--40900	24	2.3	25	81	6	69	26	25	19	28	1.99
41402--41441	20	2.0	20	85	0	53	32	5	0	62	1.17
41546--42832	644	2.0	644	97	0	2403	30	13	25	31	1.93
49046--49080	16	2.1	17	89	5	54	48	8	14	28	1.73
52636--52677	21	2.0	21	90	0	66	30	0	16	52	1.44
53769--53813	24	2.0	22	83	16	56	40	4	15	40	1.67
57080--57106	2	13.5	2	100	0	54	51	0	0	48	1.00
57843--57885	18	2.5	17	78	14	52	69	2	0	27	1.00
59826--59924	2	50.5	2	77	11	89	47	5	4	43	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59870--59941	32	2.2	32	97	0	135	44	0	11	44	1.39
60841--60889	20	2.5	20	82	0	62	34	18	22	24	1.96
60954--60987	16	2.1	17	88	5	52	44	17	0	38	1.49
61378--61412	18	1.9	18	88	0	52	31	14	0	54	1.40
62287--62331	23	1.9	24	86	4	65	31	24	24	20	1.98
66242--66275	16	2.1	17	88	5	52	41	17	2	38	1.65
66668--66702	18	1.9	18	88	0	52	31	14	0	54	1.40
69306--69463	65	2.4	63	79	12	169	25	17	24	32	1.97
75938--75977	21	1.9	21	85	10	55	35	10	2	52	1.48
77897--77953	19	3.0	19	92	0	87	26	19	31	22	1.98
77935--78095	65	2.5	65	82	5	184	26	17	24	31	1.97
77935--78136	65	3.1	63	77	12	180	26	17	24	32	1.97
78859--79212	136	2.5	142	86	9	466	49	8	5	37	1.56
80369--80410	15	3.0	15	83	10	54	57	0	7	35	1.26
84214--84588	142	2.6	142	87	7	512	50	8	4	36	1.54
85844--85890	3	17.3	3	81	16	50	70	0	2	27	0.99
85844--85890	8	5.5	8	79	20	51	70	0	2	27	0.99

Tables:   1

The End!