Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000135.1 Hibiscus syriacus cultivar Beakdansim tig00000248_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73832

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42--84
21
2.1
20
87
12
61
20
41
13
23
1.88
425--480
21
2.8
20
79
15
71
51
17
19
10
1.74
459--536
32
2.5
32
85
8
106
46
21
20
11
1.82
532--615
19
4.7
19
75
14
97
13
21
20
45
1.84
554--628
33
2.3
33
95
0
132
12
22
21
44
1.85
2341--2718
94
4.1
93
93
1
596
22
11
18
47
1.80
2822--2884
33
1.9
33
90
0
99
46
26
19
7
1.77
2836--2884
14
2.8
19
71
28
63
46
30
16
6
1.71
3458--3562
21
5.0
21
74
2
95
20
36
19
23
1.95
3483--3565
42
2.0
42
83
4
105
21
38
19
20
1.93
4918--4953
14
2.6
14
90
0
54
30
0
22
47
1.52
5055--5149
32
2.8
33
85
6
120
42
20
23
14
1.89
5158--5245
19
4.8
19
74
16
96
15
20
17
46
1.84
5166--5266
52
1.9
53
87
2
150
15
19
16
47
1.83
5250--5343
20
4.7
20
86
2
127
19
20
24
36
1.95
7723--7774
24
2.2
24
82
0
59
36
21
19
23
1.95
8621--9092
20
23.4
20
72
14
190
22
18
25
33
1.96
8601--8726
40
3.2
40
87
6
132
20
19
24
34
1.96
8723--8768
21
2.2
21
88
0
65
36
17
28
17
1.92
8840--9051
41
5.2
41
87
1
302
20
18
23
37
1.94
9086--9137
21
2.5
21
90
6
79
34
15
23
26
1.94
9933--9966
3
11.0
3
87
6
50
35
2
0
61
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13357--13395
16
2.4
16
100
0
78
38
33
0
28
1.57
32283--32359
37
2.1
37
97
0
145
36
23
7
32
1.83
33126--33262
27
4.9
26
71
21
82
45
1
1
51
1.19
33126--33262
57
2.4
56
81
11
138
45
1
1
51
1.19
33178--33264
29
3.1
27
76
16
88
45
1
0
52
1.08
34166--34221
29
1.9
29
85
0
76
21
26
21
30
1.98
35872--35913
11
3.7
11
84
6
57
28
23
23
23
2.00
35872--35938
23
2.8
24
86
2
82
25
23
23
26
2.00
36152--36214
16
3.9
16
93
0
99
11
11
20
57
1.64
36149--36199
26
2.0
26
84
7
68
11
11
17
58
1.62
43002--43077
31
2.6
28
76
15
91
50
0
0
50
1.00
43015--43066
11
5.0
11
76
19
58
53
0
0
46
1.00
48942--48995
22
2.5
22
81
0
63
55
16
9
18
1.67
52826--52937
58
1.9
59
83
10
149
35
19
15
29
1.92
54426--54662
117
2.0
116
93
2
404
45
13
11
28
1.79
62285--62340
24
2.3
24
84
3
67
30
3
0
66
1.09
64252--64364
60
1.9
60
85
7
158
33
18
17
30
1.94
66878--66943
27
2.4
27
87
5
98
37
10
15
36
1.82
72032--72073
21
2.0
21
90
9
68
47
0
0
52
1.00

Tables:   1

The End!