genome.fa.s1351.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001351.1 Hibiscus syriacus cultivar Beakdansim tig00002632_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67803

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436--492	29	1.9	30	85	3	80	14	28	24	33	1.94
6414--6526	59	1.9	59	92	0	190	30	15	19	35	1.92
7415--7475	23	2.7	23	89	0	104	27	26	29	16	1.97
7982--8047	2	33.0	2	93	6	116	48	0	1	50	1.10
10060--10197	60	2.3	60	82	8	156	30	17	18	33	1.94
13049--13092	13	3.5	13	84	6	63	18	50	15	15	1.79
13113--13206	2	50.0	2	70	12	56	52	0	0	47	1.00
13221--13270	12	4.2	12	94	0	91	26	50	16	8	1.72
14023--14130	57	1.9	57	96	0	198	37	13	9	38	1.77
17955--18003	23	2.0	24	84	7	64	2	16	14	67	1.33
19182--19388	54	3.8	54	83	4	222	24	25	18	31	1.98
19341--19562	55	4.0	55	92	0	354	28	26	15	29	1.96
19302--19562	110	2.4	110	86	7	361	29	24	16	30	1.96
20560--20618	8	7.9	8	77	21	65	13	10	0	76	1.02
30578--30615	16	2.3	16	95	4	67	36	28	7	26	1.84
33469--33517	23	2.0	24	84	7	64	0	16	16	67	1.24
34858--34908	17	3.1	16	75	13	59	35	3	0	60	1.15
35101--35152	2	26.0	2	96	0	95	48	0	0	51	1.00
39932--39965	16	2.1	16	89	10	52	76	8	14	0	1.01
39967--40000	18	1.9	17	88	5	50	73	8	17	0	1.08
40054--40400	172	2.0	174	92	3	585	36	20	17	25	1.95
40795--40871	22	3.5	22	96	0	127	38	23	15	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41680--43373	106	16.0	106	89	1	2400	34	24	17	23	1.96
44104--44198	37	2.6	37	84	0	127	40	16	11	31	1.85
44671--44720	5	9.8	5	79	12	57	36	4	0	60	1.16
44671--44724	26	2.1	26	82	6	65	35	3	0	61	1.14
44743--44768	13	2.0	13	100	0	52	23	7	0	69	1.14
44914--44972	17	3.3	18	75	15	59	23	1	0	74	0.91
44914--44956	16	2.5	17	85	14	54	23	0	0	76	0.78
44914--44967	25	2.2	25	83	6	65	24	1	0	74	0.92
45683--45718	18	2.0	18	88	0	54	22	27	25	25	2.00
52704--53421	214	3.3	214	92	1	1195	50	8	11	29	1.68
53520--53776	2	125.0	2	66	21	106	45	6	2	44	1.44
53517--53636	41	3.0	39	81	12	129	48	5	0	45	1.30
53517--53771	40	6.0	43	73	16	158	46	7	2	44	1.43
53518--53771	9	27.9	9	69	22	92	46	7	2	44	1.43
53517--53672	41	3.6	42	74	20	128	47	6	1	44	1.39
53804--53841	18	2.1	18	100	0	76	44	5	5	44	1.49
53708--53841	47	2.8	47	71	17	123	45	5	3	44	1.46
53873--53912	18	2.2	18	90	0	62	40	7	12	40	1.71
53773--53936	60	2.8	59	77	10	174	45	6	7	40	1.58
53938--53997	15	4.3	15	79	14	65	38	3	6	51	1.45
53931--53995	27	2.4	27	84	5	87	38	4	6	50	1.48
54062--54351	18	17.4	16	65	24	63	44	6	6	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54069--54123	18	2.8	18	86	10	65	41	9	5	43	1.59
54115--54148	13	2.6	13	90	0	50	55	5	2	35	1.39
54133--54341	50	4.1	51	75	13	182	43	6	6	44	1.54
54062--54224	2	77.0	2	66	23	50	46	6	5	42	1.52
54201--54341	68	2.1	68	93	2	241	41	7	5	45	1.55
54201--54354	33	4.6	33	91	4	238	42	7	5	44	1.56
54411--54552	61	2.3	61	89	4	216	49	6	9	35	1.60
54600--54624	13	1.9	13	100	0	50	56	44	0	0	0.99
55155--55230	12	6.3	12	77	6	64	42	39	7	10	1.69
55149--55206	30	1.9	31	85	3	82	46	36	3	13	1.61
55213--55283	30	2.4	30	80	0	70	36	32	12	18	1.88
57871--57911	20	2.0	20	100	0	82	9	9	19	60	1.55
58011--58055	15	3.0	15	86	0	72	28	13	26	31	1.94
58035--58087	23	2.3	23	86	0	70	24	13	24	37	1.91
58682--58767	18	4.9	18	76	9	70	54	3	3	38	1.34
66608--66660	20	2.7	20	85	2	72	45	22	13	18	1.84
66867--67187	169	1.9	168	88	8	483	44	10	13	31	1.77
67303--67359	29	2.0	29	96	0	105	49	24	12	14	1.77

Tables:   1

The End!