genome.fa.s1352.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001352.1 Hibiscus syriacus cultivar Beakdansim tig00002633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96953

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3000--3036	3	13.0	3	83	11	51	70	2	0	27	1.01
3000--3041	9	5.1	8	88	5	50	71	2	0	26	0.98
3273--3628	136	2.6	137	80	9	408	26	20	15	37	1.92
3545--3985	119	3.7	119	86	6	603	26	18	15	39	1.91
7054--7114	31	1.9	32	83	9	81	47	4	19	27	1.70
7335--7390	21	2.7	21	94	0	94	23	21	28	26	1.99
10834--10884	17	2.9	18	80	8	61	58	0	13	27	1.36
22316--22388	35	2.2	33	85	9	94	41	2	1	54	1.23
22315--22384	19	3.5	20	75	11	72	41	2	1	54	1.24
22328--22386	16	3.5	16	75	18	57	42	1	1	54	1.20
23705--23747	8	5.5	8	86	5	61	18	34	25	20	1.96
23705--23748	15	2.9	15	93	3	70	18	34	27	20	1.96
25891--25954	24	2.7	24	77	0	65	28	14	17	40	1.88
26057--26220	57	2.9	57	88	0	238	15	19	28	36	1.93
27620--27657	17	2.2	17	86	9	51	28	5	0	65	1.14
28420--28532	60	1.9	60	81	7	140	36	17	11	34	1.86
29929--30277	158	2.2	155	77	7	337	39	12	17	30	1.86
30789--30835	24	2.0	24	100	0	94	27	17	12	42	1.85
36421--36484	2	32.5	2	96	3	121	50	0	0	50	1.00
37768--37820	21	2.5	21	84	0	70	22	24	18	33	1.97
37810--37891	20	4.1	20	88	3	121	39	20	17	23	1.92
41242--41330	20	4.4	20	82	2	108	35	23	20	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41326--41397	33	2.1	34	89	2	110	45	18	23	12	1.83
41414--41495	33	2.5	33	88	4	112	15	23	17	43	1.87
41407--41473	19	3.8	19	66	24	56	17	22	14	44	1.86
41608--41644	14	2.6	14	86	0	56	48	21	0	29	1.50
43007--43066	21	2.9	21	75	9	68	25	25	28	21	1.99
43547--43595	20	2.5	20	100	0	98	38	26	20	14	1.91
43706--43810	54	1.9	54	92	0	174	18	20	20	40	1.91
43727--43810	20	4.5	20	77	17	99	20	20	21	38	1.94
45600--45667	20	3.4	20	87	0	91	44	23	16	16	1.86
45713--45759	20	2.3	20	88	0	67	21	19	23	36	1.95
46632--46664	2	16.5	2	100	0	66	51	0	0	48	1.00
46747--46786	6	7.0	6	83	11	57	17	12	0	70	1.18
46728--46786	16	3.8	16	79	14	61	15	10	0	74	1.06
46731--47041	9	32.4	9	72	18	88	18	7	1	73	1.14
46811--46883	35	2.0	37	84	10	98	17	5	0	76	0.97
46836--47036	15	13.7	14	72	13	129	16	5	1	75	1.10
46784--47042	10	25.3	10	71	20	80	18	6	1	73	1.13
46834--46884	8	7.0	7	79	20	52	15	3	0	80	0.86
46824--47045	35	6.1	36	69	23	110	17	6	1	74	1.11
46827--46988	83	2.1	80	80	14	178	16	6	2	74	1.13
47378--47440	3	21.0	3	90	6	101	33	0	1	65	1.03
48538--48568	15	2.1	15	93	0	53	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55964--56121	21	7.8	20	70	7	77	37	24	17	19	1.93
56089--56399	20	15.5	20	81	6	79	34	26	19	20	1.96
56089--56478	40	9.7	40	87	2	439	35	25	18	20	1.95
56127--56478	20	17.6	19	85	5	398	34	25	18	21	1.96
57154--57200	24	2.0	24	87	8	69	25	14	21	38	1.92
57375--57399	12	2.1	12	100	0	50	72	0	28	0	0.86
59678--60074	19	22.4	19	79	15	476	46	17	21	14	1.83
59678--60051	33	10.7	33	77	15	210	46	17	21	14	1.84
59706--60055	52	6.6	52	89	6	494	46	17	22	14	1.83
59678--60096	71	6.0	72	83	12	447	46	17	21	14	1.84
59710--60096	52	7.3	52	88	9	424	45	17	22	14	1.84
60103--60185	20	4.6	19	81	15	113	14	24	18	43	1.87
60291--60327	14	2.6	14	91	0	65	45	21	0	32	1.52
62280--62336	14	3.7	14	77	20	60	45	22	21	10	1.82
62261--62353	33	2.8	33	95	0	168	47	21	20	10	1.80
62224--62358	19	7.6	19	76	16	128	45	23	19	11	1.82
62354--62482	19	7.3	19	75	17	116	8	16	28	46	1.76
62354--62445	33	2.8	33	91	3	141	7	17	28	46	1.75
62526--62996	92	5.1	92	99	0	915	46	18	12	22	1.83
64694--64807	33	3.5	33	92	2	203	44	21	24	9	1.82
64701--64812	14	6.8	18	73	22	95	42	22	25	9	1.84
64824--64878	14	3.6	14	78	21	65	9	27	23	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64999--65069	33	2.2	33	92	0	115	47	18	22	11	1.80
65251--65305	22	2.5	22	81	0	74	20	16	40	23	1.91
65451--65643	20	9.6	20	82	5	219	19	19	25	35	1.95
65451--65643	60	3.2	60	83	0	251	19	19	25	35	1.95
67180--67250	24	3.0	24	78	0	79	59	8	9	22	1.56
67204--67237	14	2.4	14	95	0	59	64	11	5	17	1.45
71698--71734	19	1.9	19	94	0	65	32	29	16	21	1.95
71820--71908	20	4.4	20	79	8	108	29	28	17	24	1.98
72723--72782	24	2.5	24	80	0	75	25	18	16	40	1.91
75015--75049	18	1.9	18	94	0	61	54	22	2	20	1.58
75107--75389	140	2.0	140	95	0	512	28	12	15	43	1.83
75360--75485	20	6.7	20	76	11	122	32	20	20	26	1.97
75360--75436	40	1.9	40	94	0	136	31	19	20	28	1.97
75475--75532	20	2.9	20	82	10	82	13	18	24	43	1.87
75646--75697	13	3.8	13	71	14	50	59	13	1	25	1.44
77085--77187	21	4.9	21	72	4	82	23	19	34	22	1.96
77065--77187	42	2.9	42	79	2	122	23	17	35	22	1.95
77663--77706	20	2.2	20	91	0	70	52	22	11	13	1.72
77693--77740	20	2.4	20	92	0	78	35	27	18	18	1.95
77746--77808	19	3.3	19	86	4	83	46	25	15	12	1.82
77804--77841	20	1.9	20	94	0	67	13	21	18	47	1.82
77808--77873	33	2.0	34	87	3	98	16	19	16	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77876--77923	20	2.4	20	92	0	78	18	18	27	35	1.95
77876--77942	20	3.3	20	81	4	64	17	16	26	38	1.91
79836--79892	21	2.8	21	89	2	80	50	22	15	10	1.74
79836--79957	20	6.4	19	75	16	67	45	22	17	14	1.84
80334--80384	22	2.3	22	96	0	93	19	15	45	19	1.86
80531--80612	20	4.1	20	76	9	94	26	18	24	30	1.98
81862--81993	34	3.7	34	68	23	110	35	20	18	25	1.95
81836--81972	73	1.9	73	98	0	265	37	15	22	24	1.92
84711--84752	22	2.0	22	86	13	61	30	2	0	66	1.04
88070--88101	17	1.9	16	93	6	55	50	0	0	50	1.00
91144--91176	14	2.4	14	90	10	50	0	15	0	84	0.61

Tables:   1

The End!