genome.fa.s1353.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001353.1 Hibiscus syriacus cultivar Beakdansim tig00002636_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68974

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
933--971	3	13.3	3	84	15	55	64	0	0	35	0.94
1744--1777	17	2.0	17	88	0	50	70	2	0	26	1.01
4521--4645	54	2.3	54	84	2	162	28	20	23	28	1.98
5028--5078	21	2.4	21	90	0	75	39	7	21	31	1.82
6214--6299	2	43.0	2	100	0	172	50	0	0	50	1.00
8190--8234	21	2.1	21	87	0	63	24	17	28	28	1.97
8228--8295	21	3.1	22	74	21	79	25	16	25	33	1.95
8472--8607	68	2.0	67	95	1	245	22	14	16	46	1.84
14505--14561	20	2.8	20	78	5	62	31	14	24	29	1.94
14480--14561	42	2.0	41	83	4	103	29	12	26	31	1.92
14605--14657	20	2.5	20	81	6	61	26	20	26	26	1.99
14585--14649	22	3.2	20	74	16	62	27	15	30	26	1.96
15006--15056	21	2.4	21	90	0	75	39	7	19	33	1.81
15190--15259	21	3.3	21	89	0	104	24	15	28	31	1.96
15190--15318	42	3.0	41	79	10	109	25	15	25	33	1.95
15257--15320	22	2.9	22	71	15	60	26	14	23	35	1.93
20052--20082	16	1.9	16	93	0	53	41	0	6	51	1.27
23580--23639	29	2.1	29	96	0	111	41	6	5	46	1.52
24313--24360	21	2.3	21	85	7	62	33	10	22	33	1.88
27967--28001	18	1.9	18	88	0	52	34	0	0	65	0.93
29276--29433	60	2.6	60	83	5	167	32	22	5	39	1.77
29608--29704	29	3.3	29	72	11	99	43	5	18	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29554--29730	58	3.0	60	83	3	223	43	5	20	31	1.73
29608--29716	29	3.8	29	71	4	85	43	6	17	33	1.74
32252--32404	76	2.0	76	98	0	297	46	6	9	37	1.63
32490--32527	2	19.0	2	100	0	76	50	0	0	50	1.00
37630--37743	60	1.9	59	84	8	151	39	3	23	33	1.72
37630--37765	60	2.3	59	80	11	143	39	5	23	31	1.77
43278--43324	20	2.3	21	78	10	53	36	0	2	61	1.08
46965--47224	137	1.9	138	87	2	380	28	12	17	42	1.85
54075--54115	20	2.1	19	86	4	55	17	29	36	17	1.92
56414--56472	19	3.1	19	80	0	64	55	11	11	20	1.67
59086--59153	23	2.9	23	78	10	84	35	27	20	16	1.94
59093--59153	23	2.6	24	84	5	88	37	26	21	14	1.92
65237--65281	23	2.0	23	86	8	65	62	6	0	31	1.21

Tables:   1

The End!