Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001354.1 Hibiscus syriacus cultivar Beakdansim tig00002637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71038

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
536--592
25
2.1
28
81
9
66
45
7
3
43
1.48
5600--5645
21
2.2
21
84
0
56
23
21
8
45
1.80
11366--12766
232
6.0
231
96
1
2511
45
13
14
25
1.83
12535--12564
11
2.7
11
100
0
60
73
6
10
10
1.25
13929--14043
60
1.9
60
86
10
164
35
10
13
40
1.80
17328--17561
129
1.8
130
84
0
326
32
20
13
32
1.92
19441--19489
20
2.5
20
86
3
64
30
10
4
55
1.52
21637--21704
35
1.9
35
91
5
111
19
35
26
19
1.95
22551--22648
38
2.6
38
85
0
124
26
22
25
25
2.00
40781--40832
25
2.1
25
92
0
86
32
30
5
30
1.81
51227--51424
63
3.2
63
98
0
380
39
15
24
21
1.91
56237--56281
20
2.3
20
81
11
58
46
4
0
48
1.22
56282--56317
14
2.7
13
83
8
54
52
0
5
41
1.24
60607--60737
60
2.2
58
82
8
149
32
15
16
35
1.90
63812--63898
30
2.9
30
78
13
97
26
31
27
14
1.95
68143--68257
31
3.7
31
73
13
110
32
31
25
11
1.91

Tables:   1

The End!