genome.fa.s1355.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001355.1 Hibiscus syriacus cultivar Beakdansim tig00002638_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110253

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
916--1046	63	2.1	63	95	2	237	43	17	16	22	1.87
1229--1296	21	3.1	21	71	22	68	30	27	16	25	1.96
3177--3230	2	27.0	2	100	0	108	50	0	0	50	1.00
4356--4406	21	2.4	21	90	0	75	31	21	7	39	1.82
4791--4915	54	2.3	54	84	2	162	28	23	20	28	1.98
6113--6172	31	1.9	31	93	0	102	53	6	6	33	1.53
7288--7342	28	2.0	28	81	0	65	50	5	10	32	1.60
7665--7698	17	2.0	17	88	0	50	26	0	2	70	1.01
8491--8542	3	17.0	3	92	4	86	34	0	1	63	1.06
10885--11020	60	2.3	58	85	7	179	31	22	6	38	1.80
11450--11543	48	2.0	48	100	0	188	15	14	25	43	1.86
13117--13164	22	2.2	22	84	0	60	47	2	4	45	1.33
21893--21963	20	3.5	20	88	5	99	38	18	21	22	1.94
21890--22150	42	6.3	42	88	2	359	36	22	19	21	1.95
21887--22150	84	3.2	83	89	3	399	36	21	19	21	1.95
21887--22150	21	12.7	20	73	15	164	36	21	19	21	1.95
23763--23816	3	18.0	3	96	0	99	64	0	1	33	1.04
24186--24630	122	3.7	122	83	8	506	27	18	13	40	1.88
24443--24651	114	1.8	113	89	3	330	28	19	11	39	1.87
25792--25847	20	2.9	19	84	10	78	58	5	7	28	1.46
25792--25846	18	2.8	20	83	10	78	60	5	7	27	1.46
26225--26261	10	3.7	10	89	10	58	0	8	0	91	0.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26228--26260	17	1.9	17	100	0	66	0	9	0	90	0.44
29791--29821	9	3.6	9	91	8	55	54	0	22	22	1.44
35709--35737	2	14.5	2	100	0	58	48	0	0	51	1.00
35752--35799	14	3.1	14	78	18	51	18	8	4	68	1.31
35924--35985	22	2.7	22	76	14	63	29	4	0	66	1.12
35944--36012	22	3.3	20	72	20	61	26	2	1	69	1.11
35893--35999	22	4.6	22	67	29	62	28	3	1	66	1.19
41616--41688	22	3.3	22	90	3	112	41	27	12	19	1.87
42497--43772	106	12.0	106	90	0	1913	34	24	17	23	1.96
44522--44618	37	2.6	37	85	0	131	41	16	9	32	1.80
45096--45136	2	20.5	2	100	0	82	48	0	0	51	1.00
45319--45362	8	5.1	8	81	13	52	27	0	0	72	0.85
45319--45386	18	3.8	17	73	19	57	25	1	1	72	1.02
45319--45379	26	2.4	25	81	10	61	26	1	0	72	0.94
45322--45393	37	2.0	36	83	8	92	23	1	2	72	1.06
45295--45395	45	2.2	45	77	16	102	25	2	2	68	1.18
50073--50116	3	14.3	3	85	4	52	59	0	0	40	0.98
53393--53431	20	2.0	20	85	5	53	23	12	35	28	1.91
54683--54726	21	2.1	21	91	0	70	22	22	15	38	1.92
54728--54851	20	6.2	20	82	9	121	37	23	16	21	1.93
54720--54918	80	2.5	80	85	5	280	39	23	16	21	1.92
54728--54907	100	1.8	100	89	7	285	38	23	17	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54845--54911	20	3.3	20	93	4	109	40	26	16	16	1.89
54779--54968	20	9.6	20	81	11	105	36	24	15	23	1.94
54720--54968	40	6.3	40	72	17	157	38	23	15	22	1.92
56220--56253	17	1.9	18	88	5	52	32	0	5	61	1.20
56376--56458	24	3.3	26	73	10	73	25	10	1	62	1.35
59640--60051	206	2.0	206	100	0	824	38	16	20	25	1.92
61034--61136	36	2.9	36	86	4	138	26	22	12	38	1.90
61168--61442	37	7.9	37	66	23	159	28	20	13	37	1.90
61052--61507	102	4.5	102	93	0	772	30	19	12	37	1.89
61543--61588	22	2.0	23	95	4	85	21	15	17	45	1.85
61628--61701	37	2.0	37	83	0	94	28	21	10	39	1.87
62297--62587	98	2.9	98	81	5	339	32	25	21	19	1.97
62537--62890	65	5.5	65	91	2	545	34	25	19	20	1.96
62804--63018	105	2.0	107	88	1	317	33	25	19	21	1.97
68176--68211	18	2.0	18	88	0	54	58	22	0	19	1.40
68637--68677	14	3.0	14	82	3	57	58	14	0	26	1.37
68580--68719	66	2.2	64	93	2	235	52	17	1	28	1.53
70097--70179	21	4.0	21	76	16	66	28	20	31	19	1.97
70467--70585	63	1.9	62	82	5	150	30	31	13	24	1.93
70577--70626	21	2.4	21	89	0	82	34	32	16	18	1.92
72379--72418	20	2.0	20	85	0	53	15	12	22	50	1.77
73567--73663	35	2.8	35	80	3	115	44	25	1	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73824--74116	148	2.0	148	92	1	489	36	7	9	46	1.66
74617--74698	36	2.3	36	86	0	119	36	1	19	42	1.59
75014--75059	19	2.3	20	81	11	58	26	4	0	69	1.07
75003--75061	27	2.2	27	82	11	68	30	3	0	66	1.08
77894--77927	15	2.3	15	94	0	59	52	14	8	23	1.69
78039--78118	40	2.0	40	100	0	160	35	15	17	32	1.91
79951--79984	3	11.0	3	93	6	59	32	0	0	67	0.91
81429--81505	26	2.9	26	77	12	68	36	1	0	62	1.04
81479--81730	140	1.8	140	84	6	350	38	7	7	46	1.61
81713--81789	2	39.5	2	88	5	104	46	0	1	51	1.09
81479--81759	140	2.0	139	81	7	329	39	6	7	46	1.57
81740--81813	32	2.2	32	88	9	105	41	1	4	52	1.28
84005--84037	7	4.9	7	96	3	59	15	15	9	60	1.58
91491--91602	22	5.1	22	89	4	172	32	18	13	35	1.90
92277--92867	46	12.9	46	92	3	937	24	22	18	34	1.97
92793--92866	25	3.2	25	61	21	61	22	22	16	37	1.93
93101--93170	3	23.0	3	94	2	122	34	1	0	64	1.03
94728--94790	26	2.4	25	75	12	65	42	3	0	53	1.16
97143--97185	21	2.0	21	95	0	77	20	25	30	23	1.99
97147--97193	21	2.2	21	88	3	67	25	25	29	19	1.98
104399--104443	22	2.1	22	83	4	56	40	8	2	48	1.47
104472--104606	60	2.2	60	82	2	155	35	14	12	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105470--105543	12	6.4	12	72	15	50	48	5	1	44	1.34
106066--106103	20	1.9	20	88	0	58	47	18	10	23	1.79
106262--106312	22	2.3	22	93	0	84	17	47	19	15	1.83
106695--106750	20	2.8	20	83	5	78	16	17	17	48	1.82
108373--108421	21	2.4	21	86	10	66	22	12	30	34	1.91
108455--108507	21	2.6	20	76	5	61	24	7	26	41	1.81

Tables:   1

The End!