genome.fa.s1356.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001356.1 Hibiscus syriacus cultivar Beakdansim tig00002641_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126339

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154--209	24	2.4	23	91	5	94	21	10	17	50	1.77
160--209	24	2.1	24	100	0	100	24	12	16	48	1.79
8185--8317	65	2.1	64	87	7	189	30	24	16	28	1.96
8185--8337	65	2.4	64	84	7	177	30	23	16	28	1.97
35751--35791	11	3.5	12	80	12	50	70	2	17	9	1.25
40056--40102	19	2.3	20	85	7	60	6	6	8	78	1.08
42730--42776	6	7.8	6	97	0	85	19	0	0	80	0.70
43398--43451	18	3.0	18	81	5	56	46	1	0	51	1.11
48400--48434	2	17.5	2	100	0	70	48	0	0	51	1.00
48867--48904	20	1.9	20	94	0	67	31	34	15	18	1.92
53209--53368	64	2.5	65	88	3	225	33	18	20	27	1.96
53875--53977	22	4.7	22	92	0	170	14	24	32	29	1.95
72671--72739	22	3.3	21	76	15	72	23	24	26	26	2.00
72685--72754	18	3.7	18	72	18	52	22	25	25	25	2.00
72662--72754	40	2.3	39	80	5	114	21	24	26	26	1.99
75802--75866	23	2.9	23	80	13	73	29	26	21	23	1.99
78215--78249	12	2.8	12	95	4	61	48	8	0	42	1.33
78547--78584	20	1.9	20	94	0	67	31	31	15	21	1.94
78595--78753	65	2.5	64	85	3	194	31	22	16	30	1.95
81305--81444	40	3.5	40	96	0	244	34	16	27	21	1.95
84645--84716	24	3.0	24	83	0	99	48	18	15	18	1.81
84657--84716	12	5.0	12	72	8	59	46	18	18	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84645--84753	48	2.3	47	80	6	112	47	15	15	21	1.82
89695--89766	24	3.0	24	87	0	108	50	19	15	15	1.79
89697--89766	12	5.8	12	76	6	70	50	20	15	14	1.78
89697--89791	48	2.0	48	83	6	120	48	16	16	17	1.82
93535--93947	226	1.8	226	83	2	551	38	14	14	31	1.87
97673--97744	30	2.4	30	97	2	135	16	16	22	44	1.86
97852--98210	173	2.1	174	87	3	528	32	13	10	44	1.77
98023--98455	193	2.2	193	88	2	620	30	13	11	44	1.80
106398--106436	19	2.1	19	95	0	69	33	2	0	64	1.08
107072--107117	15	3.1	15	87	0	74	34	26	15	23	1.94
107214--107254	20	2.0	20	100	0	82	60	19	9	9	1.55
110006--110057	5	9.2	5	77	22	50	17	51	21	9	1.73
110011--110063	13	4.3	13	81	13	76	16	49	20	13	1.79
109989--110063	18	4.2	18	76	19	84	18	49	20	12	1.79
112533--112641	24	4.5	24	75	4	103	20	15	16	47	1.82
114784--114840	5	10.2	5	75	20	51	17	50	21	10	1.75
114789--114859	13	5.3	13	81	6	88	16	47	21	14	1.81
114767--114853	18	4.6	18	75	13	84	18	49	20	11	1.78
114815--114840	5	5.2	5	100	0	52	19	57	23	0	1.40
117321--117429	24	4.5	24	75	4	103	20	15	16	47	1.82
118780--118804	13	1.9	13	100	0	50	0	0	44	56	0.99
118853--118992	60	2.3	59	87	6	201	35	9	6	48	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119051--119190	30	4.6	30	80	15	171	42	6	7	43	1.57
119108--119191	15	5.6	15	64	20	50	42	4	7	45	1.52
119138--119230	47	2.0	47	84	12	122	44	5	5	45	1.49
119051--119193	62	2.3	61	82	15	188	41	6	6	44	1.58
119152--119258	47	2.2	49	83	11	139	42	7	3	46	1.50
119248--119274	13	2.1	13	100	0	54	29	0	7	62	1.22
119276--119322	15	3.1	15	87	3	58	46	6	6	40	1.55
119465--119498	16	2.1	16	88	0	50	38	14	8	38	1.78
119489--119552	30	2.0	33	88	8	98	46	7	3	42	1.48
119530--119567	18	2.1	18	95	0	67	44	2	5	47	1.39
119596--119842	2	124.0	2	65	22	94	44	2	6	46	1.41
119555--119844	20	14.3	20	66	22	76	43	2	6	47	1.43
119723--119847	27	4.4	28	73	16	91	45	0	5	48	1.31
119945--120655	215	3.4	211	88	6	1064	30	11	8	50	1.67
120586--120631	13	3.1	15	75	15	51	30	2	2	65	1.16
121636--121670	2	17.5	2	100	0	70	51	0	0	48	1.00

Tables:   1

The End!