Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001357.1 Hibiscus syriacus cultivar Beakdansim tig00002642_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89002

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
877--909
13
2.5
14
85
14
52
30
0
18
51
1.46
7766--7814
22
2.2
22
92
0
80
34
14
14
36
1.86
13174--13246
23
3.3
22
76
7
85
27
21
24
26
2.00
13169--13235
21
3.1
21
75
8
80
25
20
26
26
1.99
17035--17078
21
2.0
21
82
8
52
34
9
2
54
1.44
18849--18900
21
2.5
21
87
9
79
19
25
30
25
1.98
19868--19961
20
4.8
20
92
2
154
29
14
20
35
1.93
19868--19961
39
2.4
40
90
3
154
29
14
20
35
1.93
20691--20725
17
2.1
17
89
5
54
51
0
0
48
1.00
24024--24080
27
2.1
27
100
0
114
36
19
10
33
1.86
31823--31916
29
3.1
29
65
14
82
31
20
4
43
1.71
32038--32214
60
3.0
59
76
10
173
42
4
18
34
1.71
33700--33745
21
2.1
23
84
8
60
34
2
6
56
1.37
34251--34293
22
2.0
22
81
9
52
34
2
9
53
1.46
41206--41248
21
2.0
21
95
0
77
46
16
0
37
1.47
43619--43649
2
15.5
2
100
0
62
48
0
0
51
1.00
53420--53444
2
12.5
2
100
0
50
52
0
0
48
1.00
55121--55159
19
2.1
19
90
0
60
56
2
0
41
1.13
56728--56776
21
2.3
20
82
6
53
28
2
26
42
1.66
58444--58476
3
11.0
3
100
0
66
33
0
0
66
0.92
63819--63904
34
2.5
34
85
9
113
25
12
15
46
1.81
67011--67041
14
2.3
14
94
5
55
16
16
22
45
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69046--69117
34
2.1
33
90
10
110
27
12
15
44
1.82
69522--69626
31
3.4
30
81
4
111
14
30
30
24
1.94
78441--78480
19
2.0
20
95
4
73
40
0
20
40
1.52

Tables:   1

The End!