genome.fa.s1358.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001358.1 Hibiscus syriacus cultivar Beakdansim tig00002643_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107544

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4048--4081	18	1.9	18	88	5	52	26	32	26	14	1.95
5811--5998	31	6.1	31	90	3	290	38	21	19	20	1.94
6948--7015	18	3.9	18	74	14	72	23	30	29	16	1.96
9965--9995	16	1.9	16	100	0	62	22	6	19	51	1.69
10385--10425	19	2.2	19	95	0	73	17	26	31	24	1.97
14756--14944	94	2.0	93	83	3	236	45	12	11	31	1.76
20800--20932	70	1.9	70	93	0	230	51	18	16	12	1.75
21283--21340	30	1.9	30	85	0	80	12	22	25	39	1.89
22143--22184	22	2.0	22	90	4	68	28	4	0	66	1.12
25981--26033	25	2.1	26	82	10	65	41	11	3	43	1.58
26625--26771	30	5.0	30	73	13	101	24	19	7	48	1.75
27144--27200	25	2.3	25	96	0	105	35	17	12	35	1.87
29735--29829	24	3.7	23	70	23	64	48	2	1	48	1.20
30262--30412	64	2.4	64	79	2	151	43	19	10	26	1.84
30308--30442	32	4.2	32	72	2	103	42	17	13	25	1.86
30918--30962	18	2.5	18	92	7	74	66	2	8	22	1.30
30927--30972	18	2.3	20	82	14	60	63	2	13	21	1.40
34330--34407	38	2.1	38	100	0	156	34	28	14	23	1.93
35138--35176	18	2.2	18	100	0	78	56	5	12	25	1.57
35289--35330	22	1.9	22	90	0	66	57	2	9	30	1.44
36057--36127	30	2.4	30	87	0	97	23	25	19	30	1.98
37084--37142	27	2.1	28	87	3	84	40	22	13	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40294--40837	270	2.0	270	95	0	973	40	12	20	27	1.87
43193--43290	36	2.8	35	82	14	123	28	3	19	48	1.63
45915--46106	53	3.6	53	98	0	366	21	25	18	34	1.96
46964--47026	16	3.8	16	73	12	56	41	11	7	39	1.70
48195--48310	60	1.9	61	81	8	139	33	20	5	40	1.75
48455--48638	60	3.1	58	75	9	176	36	5	23	33	1.80
52586--52626	20	2.0	20	100	0	82	34	51	4	9	1.56
52605--52939	167	2.0	167	96	0	616	21	34	11	32	1.89
52802--52958	77	2.1	76	82	3	190	21	31	11	35	1.89
56979--57051	30	2.5	31	82	13	91	39	9	19	31	1.84
58028--58097	32	2.2	32	85	5	99	32	11	28	27	1.91
59124--59261	45	3.1	45	87	4	210	43	5	20	31	1.73
59958--59993	13	2.8	13	91	0	54	47	25	16	11	1.79
61630--61663	2	17.0	2	100	0	68	50	0	0	50	1.00
62381--62421	2	20.5	2	100	0	82	51	0	0	48	1.00
65915--66001	4	21.5	4	80	15	56	68	0	4	26	1.08
65916--66016	21	5.1	19	72	17	64	66	0	3	29	1.10
65917--66016	9	11.3	9	80	14	77	66	0	4	30	1.10
66045--66096	18	2.8	18	91	8	79	50	3	3	42	1.39
66134--66187	16	3.6	16	71	19	53	37	16	7	38	1.77
66148--66199	12	4.0	12	72	18	50	38	13	7	40	1.73
66134--66200	28	2.4	28	89	0	107	37	16	7	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67911--67948	20	1.9	20	84	10	51	42	15	0	42	1.47
70469--70510	22	1.9	22	85	9	59	9	11	35	42	1.74
74114--74172	3	19.3	3	92	3	100	33	1	0	64	1.04
75503--75538	17	2.2	16	90	5	54	19	2	5	72	1.17
76035--76367	131	2.5	131	91	0	533	32	12	18	37	1.87
77017--77296	145	1.9	145	97	0	533	29	10	10	50	1.69
79335--79430	27	3.6	27	87	2	122	36	19	16	27	1.93
79546--79598	17	3.2	17	81	2	63	45	9	3	41	1.54
86667--86726	29	2.1	29	93	0	102	35	21	16	26	1.95
92698--92843	70	2.1	72	88	7	219	52	2	7	37	1.44
92711--92826	34	3.3	35	70	14	105	49	2	7	40	1.45
96095--96138	3	14.7	3	95	0	79	34	31	0	34	1.58
96386--96455	32	2.2	32	89	0	104	40	0	31	28	1.57
98864--98910	2	23.5	2	100	0	94	48	0	0	51	1.00
99255--99285	16	1.9	16	93	0	53	35	6	3	54	1.42
100843--100868	12	2.2	12	100	0	52	26	34	15	23	1.94
100911--100958	21	2.3	21	78	7	53	29	18	14	37	1.91
101622--101653	14	2.3	14	94	0	55	6	21	21	50	1.71
101634--101731	20	4.9	20	82	2	90	15	16	20	47	1.82
101695--101738	20	2.2	20	87	0	61	11	11	20	56	1.64
103628--103676	20	2.5	20	96	0	89	36	26	22	14	1.92
103724--103799	33	2.3	34	90	2	118	14	21	19	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103791--103859	20	3.5	20	89	0	102	18	18	24	37	1.94
104371--104474	21	5.0	21	70	8	77	21	35	18	25	1.95
104365--104487	42	2.9	42	81	0	120	22	35	17	24	1.95
105960--106023	20	3.2	20	86	0	92	48	23	15	12	1.79
106018--106232	20	11.4	20	80	12	231	23	19	21	35	1.96
106203--106485	140	2.0	140	96	0	521	43	15	12	29	1.82
106543--106576	17	1.9	18	88	5	52	17	2	26	52	1.58
106785--106875	20	4.8	20	76	15	104	24	17	23	35	1.95
106846--107128	140	2.0	140	95	1	514	44	15	12	28	1.82
107186--107219	17	1.9	18	88	5	52	17	2	26	52	1.58
106142--107428	643	2.0	643	98	0	2466	31	17	17	33	1.93

Tables:   1

The End!