Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000136.1 Hibiscus syriacus cultivar Beakdansim tig00000249_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61317
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34
Found at i:76 original size:32 final size:32
Alignment explanation
Indices: 34--95 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
24 TATGGAAATA
*
34 AGAAGTATCTCTA-CAAGAGGAGCATAACAATG
1 AGAAGCATCTCTACCAA-AGGAGCATAACAATG
*
66 AGAAGCATCTCTACCAAATGAGCATAACAA
1 AGAAGCATCTCTACCAAAGGAGCATAACAA
96 CCATTTCTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 24 0.89
33 3 0.11
ACGTcount: A:0.45, C:0.19, G:0.18, T:0.18
Consensus pattern (32 bp):
AGAAGCATCTCTACCAAAGGAGCATAACAATG
Found at i:3777 original size:54 final size:53
Alignment explanation
Indices: 3689--3900 Score: 200
Period size: 54 Copynumber: 4.0 Consensus size: 53
3679 CCCTGACCAG
* * * *
3689 ACATCTGTGCAGAAGCCACAGGAAAGGATAAATGTGTTGTCAAATGTTTTACGA
1 ACATCTGAGCAGAAACCACAGGAAAAGATGAATGTGTT-TCAAATGTTTTACGA
*
3743 ACATCT-ATGTC-GAAACCACAGGAAAATATGAATGTG-TTCAAATGTTTTACGA
1 ACATCTGA-G-CAGAAACCACAGGAAAAGATGAATGTGTTTCAAATGTTTTACGA
* *
3795 ACATCTGAGCAGAAACCACAAGAAAAGATGAATGTGTTATCACAA-GCTTTACGA
1 ACATCTGAGCAGAAACCACAGGAAAAGATGAATGTGTT-TCA-AATGTTTTACGA
* * * * * * *
3849 AAATCCGGGCAGAAGCCAC-GAGAAAGGATGAATGTATTGTCACATGTTTTAC
1 ACATCTGAGCAGAAACCACAG-GAAAAGATGAATGTGTT-TCAAATGTTTTAC
3901 AAACCAGTGA
Statistics
Matches: 131, Mismatches: 18, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
51 1 0.01
52 45 0.34
53 4 0.03
54 78 0.60
55 3 0.02
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.25
Consensus pattern (53 bp):
ACATCTGAGCAGAAACCACAGGAAAAGATGAATGTGTTTCAAATGTTTTACGA
Found at i:3810 original size:52 final size:52
Alignment explanation
Indices: 3689--3832 Score: 184
Period size: 52 Copynumber: 2.7 Consensus size: 52
3679 CCCTGACCAG
* * * *
3689 ACATCTGTGCAGAAGCCACAGGAAAGGATAAATGTGTTGTCAAATGTTTTACGA
1 ACATCTGAGCAGAAACCACAGGAAAAGATGAATGTG-T-TCAAATGTTTTACGA
*
3743 ACATCT-ATGTC-GAAACCACAGGAAAATATGAATGTGTTCAAATGTTTTACGA
1 ACATCTGA-G-CAGAAACCACAGGAAAAGATGAATGTGTTCAAATGTTTTACGA
*
3795 ACATCTGAGCAGAAACCACAAGAAAAGATGAATGTGTT
1 ACATCTGAGCAGAAACCACAGGAAAAGATGAATGTGTT
3833 ATCACAAGCT
Statistics
Matches: 79, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
51 1 0.01
52 47 0.59
53 2 0.03
54 28 0.35
55 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (52 bp):
ACATCTGAGCAGAAACCACAGGAAAAGATGAATGTGTTCAAATGTTTTACGA
Found at i:4293 original size:22 final size:22
Alignment explanation
Indices: 4263--4322 Score: 86
Period size: 22 Copynumber: 2.7 Consensus size: 22
4253 TCTACATCTA
4263 CACTCTTCAAAGATGATAGATGT
1 CACTCTTCAAAGATGATAGAT-T
*
4286 -TCTCTTCAAAGATGATAGATT
1 CACTCTTCAAAGATGATAGATT
*
4307 CACTTTTCAAAGATGA
1 CACTCTTCAAAGATGA
4323 AAGCTTTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
21 1 0.03
22 32 0.97
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (22 bp):
CACTCTTCAAAGATGATAGATT
Found at i:4873 original size:123 final size:123
Alignment explanation
Indices: 4706--5147 Score: 476
Period size: 123 Copynumber: 3.7 Consensus size: 123
4696 TTCAATGGGT
4706 CAACTTTTCCAGAGAA-GTTCATAATGAGAAGAACTTATCTGAAGAAGAAGAAGAAGTTCATAAT
1 CAACTTTTCCAGAGAAGGTTCATAATGAGAAGAACTTATCTGAAGAAGAAGAAGAAGTTCATAAT
* * * * *
4770 AAGAAGAGCTTGTTCAACCTTTTGTATGACTCTATCACAGAAGGATATAGATTAGCAC
66 AAGAAGAACTTGTTCAACCTTTTGCATGACTCTATCACAGAAAGAGATAGATCAGCAC
* * *
4828 CAACATTTCCAGAGAAGGTTCATAATGAGAAGAACTTATATGAAGAGGAAGAAGAAGTTCATAAT
1 CAACTTTTCCAGAGAAGGTTCATAATGAGAAGAACTTATCTGAAGAAGAAGAAGAAGTTCATAAT
* * * *
4893 GAGAAGAACTTGTTCAACC-TTTCCATGACTCTATCACAGAAAGAGATAGATCATCAT
66 AAGAAGAACTTGTTCAACCTTTTGCATGACTCTATCACAGAAAGAGATAGATCAGCAC
* *
4950 CAACTTTTCC--AGAAGAGTTCATAATGAGAAGAACTCATCTGAAGATG-AGAA-AAGTTCATAA
1 CAACTTTTCCAGAGAAG-GTTCATAATGAGAAGAACTTATCTGAAGAAGAAGAAGAAGTTCATAA
* * ** *
5011 TAAGAAGAACTTGTTAAACCTTTTGC-TCGAAT-TCATCAC-----TCGATGGATCA--A-
65 TAAGAAGAACTTGTTCAACCTTTTGCAT-GACTCT-ATCACAGAAAGAGATAGATCAGCAC
* * *
5062 C-A-TTTT-C-GA-AAGAGTTCATAATGAGAAGAACTCATCTGAAAAAGAAGAATAAGTTCATAA
1 CAACTTTTCCAGAGAAG-GTTCATAATGAGAAGAACTTATCTGAAGAAGAAGAAGAAGTTCATAA
* * *
5122 TGAGAAGAATTTGTTCAACTTTTTGC
65 TAAGAAGAACTTGTTCAACCTTTTGC
5148 TAGATTACAT
Statistics
Matches: 283, Mismatches: 29, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
109 34 0.12
110 9 0.03
111 33 0.12
112 1 0.00
113 1 0.00
115 8 0.03
119 30 0.11
120 21 0.07
121 28 0.10
122 55 0.19
123 63 0.22
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (123 bp):
CAACTTTTCCAGAGAAGGTTCATAATGAGAAGAACTTATCTGAAGAAGAAGAAGAAGTTCATAAT
AAGAAGAACTTGTTCAACCTTTTGCATGACTCTATCACAGAAAGAGATAGATCAGCAC
Found at i:4907 original size:20 final size:20
Alignment explanation
Indices: 4845--4908 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
4835 TCCAGAGAAG
4845 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
* ***
4865 -AT-ATGAA-GAGGAAGAAGAA
1 GTTCAT-AATGA-GAAGAACTT
4884 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
4904 GTTCA
1 GTTCA
4909 ACCTTTCCAT
Statistics
Matches: 31, Mismatches: 8, Indels: 10
0.63 0.16 0.20
Matches are distributed among these distances:
18 4 0.13
19 9 0.29
20 14 0.45
21 4 0.13
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.25
Consensus pattern (20 bp):
GTTCATAATGAGAAGAACTT
Found at i:5082 original size:109 final size:111
Alignment explanation
Indices: 4948--5148 Score: 309
Period size: 109 Copynumber: 1.8 Consensus size: 111
4938 ATAGATCATC
* *
4948 ATCAACTTTTCCAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGATG-AGAA-AAGTTCATAA
1 ATCAACTTTTCCAGAAGAGTTCATAATGAGAAGAACTCATCTGAAAAAGAAGAATAAGTTCATAA
5011 TAAGAAGAACTTGTTAAACCTTTTGCTCGAATTCATCACTCGATGG
66 TAAGAAGAACTTGTTAAACCTTTTGCTCGAATTCATCACTCGATGG
*
5057 ATCAACATTTTCGA-AAGAGTTCATAATGAGAAGAACTCATCTGAAAAAGAAGAATAAGTTCATA
1 ATCAAC-TTTTCCAGAAGAGTTCATAATGAGAAGAACTCATCTGAAAAAGAAGAATAAGTTCATA
* * * *
5121 ATGAGAAGAATTTGTTCAACTTTTTGCT
65 ATAAGAAGAACTTGTTAAACCTTTTGCT
5149 AGATTACATC
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
109 39 0.48
110 10 0.12
111 33 0.40
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (111 bp):
ATCAACTTTTCCAGAAGAGTTCATAATGAGAAGAACTCATCTGAAAAAGAAGAATAAGTTCATAA
TAAGAAGAACTTGTTAAACCTTTTGCTCGAATTCATCACTCGATGG
Found at i:5375 original size:3 final size:3
Alignment explanation
Indices: 5369--5452 Score: 109
Period size: 3 Copynumber: 28.0 Consensus size: 3
5359 ATTTTGTTTT
*
5369 TTA TTA TTA TT- TTA TT- TTA TTA CTA TTA TTA TATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* *
5413 TTA TTA TTA TTA TTAA TTT TTA TTA ATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA
5453 CAAACATGCC
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
2 4 0.06
3 61 0.86
4 6 0.08
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:5397 original size:19 final size:19
Alignment explanation
Indices: 5359--5452 Score: 82
Period size: 19 Copynumber: 4.7 Consensus size: 19
5349 AGTTTTTTTC
*
5359 ATTTTGTTTT-TTATTATT
1 ATTTTATTTTATTATTATT
*
5377 ATTTTATTTTATTACTATT
1 ATTTTATTTTATTATTATT
* *
5396 ATTATATATTATTATTATT
1 ATTTTATTTTATTATTATT
*
5415 ATTATTATTATTAATTTTTATT
1 ATT-TTATT-TT-ATTATTATT
*
5437 AATATTATTATTATTA
1 -ATTTTATT-TTATTA
5453 CAAACATGCC
Statistics
Matches: 61, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
18 9 0.15
19 26 0.43
20 3 0.05
21 5 0.08
22 16 0.26
23 2 0.03
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.67
Consensus pattern (19 bp):
ATTTTATTTTATTATTATT
Found at i:5397 original size:25 final size:25
Alignment explanation
Indices: 5369--5451 Score: 93
Period size: 25 Copynumber: 3.4 Consensus size: 25
5359 ATTTTGTTTT
*
5369 TTATTATTATTTTATTTTATTACTA
1 TTATTATTATTTTATTTTATTAATA
* *
5394 TTATTA-TATATTA--TTATTATTA
1 TTATTATTATTTTATTTTATTAATA
*
5416 TTATTATTA-TTAATTTTTATTAATA
1 TTATTATTATTTTA-TTTTATTAATA
5441 TTATTATTATT
1 TTATTATTATT
5452 ACAAACATGC
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
22 16 0.33
23 2 0.04
24 6 0.12
25 23 0.48
26 1 0.02
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (25 bp):
TTATTATTATTTTATTTTATTAATA
Found at i:5452 original size:25 final size:24
Alignment explanation
Indices: 5370--5452 Score: 102
Period size: 22 Copynumber: 3.6 Consensus size: 24
5360 TTTTGTTTTT
*
5370 TATTATTATT-TTA-TTTTATTAC
1 TATTATTATTATTATTTTTATTAA
* *
5392 TATTATTA-TA-TATTATTATTAT
1 TATTATTATTATTATTTTTATTAA
5414 TATTATTATTATTAATTTTTATTAA
1 TATTATTATTATT-ATTTTTATTAA
5439 TATTATTATTATTA
1 TATTATTATTATTA
5453 CAAACATGCC
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
21 3 0.06
22 23 0.44
23 2 0.04
24 2 0.04
25 22 0.42
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (24 bp):
TATTATTATTATTATTTTTATTAA
Found at i:7247 original size:141 final size:139
Alignment explanation
Indices: 7059--7495 Score: 474
Period size: 140 Copynumber: 3.3 Consensus size: 139
7049 ATATATATAT
* * * * *
7059 TAAATAAAAATCCTATTTA-TAAAT-TTAATTTTATATAAATTACTTTTAGGAAAAATAATCA-T
1 TAAATAAATATCCTATTTATTATATATTAA-TTTATTTTAATTATTTTTAGGAAAAATAATCATT
*
7121 -AT-TTTAATATGTA-TTTTTAATATTAAGAAAATGGTTGTCTTAAAGCACCTAGAAGTCATTTT
65 AATATTT-AT-T-TATTTTTTAATATTAAG-AAATGGCTGTCTTAAAGCACCTAGAAGTCATTTT
7183 CTGATATTCTTAAA
126 CTGATATTCTTAAA
* * *
7197 TAAATAAATATCCTATTTTTATTATATATTAATTTATTTTAATTATTTTTA-GAGAAATATTTAT
1 TAAATAAATATCCTA--TTTATTATATATTAATTTATTTTAATTATTTTTAGGAAAAATAATCAT
7261 TAATATTTATTTATTTTTTAATATTAAGAAATGGCTGTCTTAAAGCACCTAGAAGTCATTTTCTG
64 TAATATTTATTTATTTTTTAATATTAAGAAATGGCTGTCTTAAAGCACCTAGAAGTCATTTTCTG
7326 ATATTCTTAAA
129 ATATTCTTAAA
*
7337 TAAATAAATATCCTA--TATTATATATTAATTTATTTTAATTATTTTTA-G----AGAAT-A-TA
1 TAAATAAATATCCTATTTATTATATATTAATTTATTTTAATTATTTTTAGGAAAAATAATCATTA
* * *
7393 AT-TTTA-TTATTTATTAATATTATG--A--GTTGTCTTAAAGCACCTAGAAGTCATTTTCTGAT
66 ATATTTATTTATTTTTTAATATTAAGAAATGGCTGTCTTAAAGCACCTAGAAGTCATTTTCTGAT
7452 ATT-TCT--A
131 ATTCT-TAAA
* *
7459 TAAATAAATATCTTATTTATTAAATATATTAAATTAT
1 TAAATAAATATCCTATTTATT--ATATATTAATTTAT
7496 ACTAATAAAT
Statistics
Matches: 270, Mismatches: 16, Indels: 38
0.83 0.05 0.12
Matches are distributed among these distances:
122 15 0.06
123 1 0.00
124 41 0.15
126 14 0.05
128 16 0.06
129 4 0.01
130 4 0.01
131 1 0.00
132 3 0.01
136 33 0.12
138 14 0.05
140 77 0.29
141 36 0.13
142 8 0.03
143 3 0.01
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.47
Consensus pattern (139 bp):
TAAATAAATATCCTATTTATTATATATTAATTTATTTTAATTATTTTTAGGAAAAATAATCATTA
ATATTTATTTATTTTTTAATATTAAGAAATGGCTGTCTTAAAGCACCTAGAAGTCATTTTCTGAT
ATTCTTAAA
Found at i:7386 original size:136 final size:129
Alignment explanation
Indices: 7134--7468 Score: 482
Period size: 140 Copynumber: 2.5 Consensus size: 129
7124 TTAATATGTA
7134 TTTTTAATATTAAGAAAATGGTTGTCTTAAAGCACCTAGAAGTCATTTTCTGATATTCTTAAATA
1 TTTTTAATATTAAG-AAATGGTTGTCTTAAAGCACCTAGAAGTCATTTTCTGATATTCTTAAATA
7199 AATAAATATCCTATTTTTATTATATATTAATTTATTTTAATTATTTTTAGAGAAATATTTATTAA
65 AATAAATATCCTA---TTATTATATATTAATTTATTTTAATTATTTTTAGAG--A-A--TA-TAA
7264 TATTTATTTAT
121 T-TTTA-TTAT
*
7275 TTTTTAATATTAAGAAATGGCTGTCTTAAAGCACCTAGAAGTCATTTTCTGATATTCTTAAATAA
1 TTTTTAATATTAAGAAATGGTTGTCTTAAAGCACCTAGAAGTCATTTTCTGATATTCTTAAATAA
7340 ATAAATATCCTA-TATTATATATTAATTTATTTTAATTATTTTTAGAGAATATAATTTTATTAT
66 ATAAATATCCTATTATTATATATTAATTTATTTTAATTATTTTTAGAGAATATAATTTTATTAT
* *
7403 TTATTAATATTATG--A--GTTGTCTTAAAGCACCTAGAAGTCATTTTCTGATATTTCTATAAAT
1 TTTTTAATATTAAGAAATGGTTGTCTTAAAGCACCTAGAAGTCATTTTCTGATA-TTCT-TAAAT
7464 AAATA
64 AAATA
7469 TCTTATTTAT
Statistics
Matches: 188, Mismatches: 4, Indels: 19
0.89 0.02 0.09
Matches are distributed among these distances:
124 34 0.18
125 4 0.02
126 11 0.06
128 16 0.09
129 4 0.02
130 4 0.02
131 2 0.01
133 1 0.01
134 1 0.01
136 35 0.19
140 62 0.33
141 14 0.07
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (129 bp):
TTTTTAATATTAAGAAATGGTTGTCTTAAAGCACCTAGAAGTCATTTTCTGATATTCTTAAATAA
ATAAATATCCTATTATTATATATTAATTTATTTTAATTATTTTTAGAGAATATAATTTTATTAT
Found at i:9427 original size:18 final size:18
Alignment explanation
Indices: 9406--9440 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9396 TTCCCCTTCA
9406 TTTTCTCCTCTTTCTTTC
1 TTTTCTCCTCTTTCTTTC
* *
9424 TTTTTTCTTCTTTCTTT
1 TTTTCTCCTCTTTCTTT
9441 TCCTCCCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTCTCCTCTTTCTTTC
Found at i:16412 original size:90 final size:90
Alignment explanation
Indices: 16256--16433 Score: 311
Period size: 90 Copynumber: 2.0 Consensus size: 90
16246 CCTAACACAC
*
16256 CCTTTTATAACCAAGTTACCCTAATCATATTAGGGTTTTTATTATTTCAAATTAATTAAATATAT
1 CCTTTTATAACCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATATAT
**
16321 ATTTAATTAATTGGAATTTAATAAT
66 ATTTAATTAATTAAAATTTAATAAT
* *
16346 CCTTTTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAACCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATATAT
16411 ATTTAATTAATTAAAATTTAATA
66 ATTTAATTAATTAAAATTTAATA
16434 TTCGAGATTA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 83 1.00
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.46
Consensus pattern (90 bp):
CCTTTTATAACCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATATAT
ATTTAATTAATTAAAATTTAATAAT
Found at i:19285 original size:44 final size:44
Alignment explanation
Indices: 19235--19320 Score: 118
Period size: 44 Copynumber: 2.0 Consensus size: 44
19225 TCGAGGGTTT
* * * *
19235 TATGTGGTCCTTCGGGACAATTATGTGCCACTTTGGTGCAAACC
1 TATGTGGTCATTCAGGACAATTATATGCCACTTTGATGCAAACC
* *
19279 TATGTGGTCATTCAGGATAATTATATGGCACTTTGATGCAAA
1 TATGTGGTCATTCAGGACAATTATATGCCACTTTGATGCAAA
19321 TTACGAGCTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (44 bp):
TATGTGGTCATTCAGGACAATTATATGCCACTTTGATGCAAACC
Found at i:20833 original size:32 final size:34
Alignment explanation
Indices: 20792--20872 Score: 82
Period size: 32 Copynumber: 2.5 Consensus size: 34
20782 TCATATATCT
* *
20792 TATAACATATACA-AT-ATTCATTAACAC-ACACA
1 TATATCATATACATATAATTCA-TAACACAAAACA
*
20824 TATATCATAT-CATATAATTCATATCACAAAACA
1 TATATCATATACATATAATTCATAACACAAAACA
*
20857 TATAT-ATATATATATA
1 TATATCATATACATATA
20873 TATCACATAC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
31 2 0.05
32 20 0.49
33 19 0.46
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (34 bp):
TATATCATATACATATAATTCATAACACAAAACA
Found at i:20845 original size:33 final size:31
Alignment explanation
Indices: 20807--20870 Score: 76
Period size: 33 Copynumber: 2.0 Consensus size: 31
20797 CATATACAAT
*
20807 ATTCATTAACAC-ACACATATATCATATCATATA
1 ATTCA-TAACACAAAACATATAT-ATAT-ATATA
*
20840 ATTCATATCACAAAACATATATATATATATA
1 ATTCATAACACAAAACATATATATATATATA
20871 TATATCACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 5 0.18
32 9 0.32
33 14 0.50
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.34
Consensus pattern (31 bp):
ATTCATAACACAAAACATATATATATATATA
Found at i:21846 original size:24 final size:20
Alignment explanation
Indices: 21775--21850 Score: 98
Period size: 20 Copynumber: 3.6 Consensus size: 20
21765 TCCCTTGAAG
*
21775 TGCATCGATGCATTCTACAG
1 TGCATCGATGCATTCTACAA
*
21795 TGCATCGATGTATTCTACAA
1 TGCATCGATGCATTCTACAA
21815 TGCATCGATGCATTCATTAACATA
1 TGCATCGATGCATTC--T-ACA-A
21839 TGCATCGATGCA
1 TGCATCGATGCA
21851 CTACCCATGC
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
20 32 0.65
22 1 0.02
23 3 0.06
24 13 0.27
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (20 bp):
TGCATCGATGCATTCTACAA
Found at i:21906 original size:64 final size:63
Alignment explanation
Indices: 21838--21998 Score: 198
Period size: 64 Copynumber: 2.5 Consensus size: 63
21828 TCATTAACAT
* * *
21838 ATGCATCGATGCACTACCCATGCATCGATACACAAATTACCTTCGATGTTTTCATTTTAAGGGG
1 ATGCATCGATGCACT-CCTATGCATCGATACACAAATTACATTCGATGTTTCCATTTTAAGGGG
* * * * *
21902 ATGCATCGATGCACTCCTTATGCATCGATGCACCATTTTCATTCGATGTTTCCATTTTTAGGGG
1 ATGCATCGATGCACTCC-TATGCATCGATACACAAATTACATTCGATGTTTCCATTTTAAGGGG
* *
21966 -TGCATCGATGCACTTCTTGTGCATCGATACACA
1 ATGCATCGATGCAC-TCCTATGCATCGATACACA
21999 CTGAACAATT
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
63 28 0.34
64 55 0.66
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (63 bp):
ATGCATCGATGCACTCCTATGCATCGATACACAAATTACATTCGATGTTTCCATTTTAAGGGG
Found at i:29327 original size:20 final size:20
Alignment explanation
Indices: 29302--29352 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
29292 ATATACGCTG
29302 GTATCGATACT-AGCCTTTCA
1 GTATCGATACTGA-CCTTTCA
* *
29322 GTATCGGTACTGACCTTTTA
1 GTATCGATACTGACCTTTCA
29342 GTATCGATACT
1 GTATCGATACT
29353 TTGCTCTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.37
Consensus pattern (20 bp):
GTATCGATACTGACCTTTCA
Found at i:34237 original size:19 final size:19
Alignment explanation
Indices: 34213--34249 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
34203 ATGACCAACA
*
34213 AAATCGCAATGCGATCTCT
1 AAATCGCAACGCGATCTCT
34232 AAATCGCAACGCGATCTC
1 AAATCGCAACGCGATCTC
34250 CAGTATCGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (19 bp):
AAATCGCAACGCGATCTCT
Found at i:34376 original size:21 final size:21
Alignment explanation
Indices: 34346--34421 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
34336 CGAATATGTA
34346 AATCGCAACGCGATAATACAT
1 AATCGCAACGCGATAATACAT
* **
34367 AATCGTAACGCGATTTTGAC-T
1 AATCGCAACGCGATAAT-ACAT
*
34388 -ATCGCAACGCGATAATACAA
1 AATCGCAACGCGATAATACAT
*
34408 AATCGCAATGCGAT
1 AATCGCAACGCGAT
34422 TTTCAAAGCG
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
19 2 0.05
20 13 0.30
21 27 0.61
22 2 0.05
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (21 bp):
AATCGCAACGCGATAATACAT
Found at i:34392 original size:41 final size:41
Alignment explanation
Indices: 34347--34424 Score: 129
Period size: 41 Copynumber: 1.9 Consensus size: 41
34337 GAATATGTAA
* *
34347 ATCGCAACGCGATAATACATAATCGTAACGCGATTTTGACT
1 ATCGCAACGCGATAATACAAAATCGCAACGCGATTTTGACT
*
34388 ATCGCAACGCGATAATACAAAATCGCAATGCGATTTT
1 ATCGCAACGCGATAATACAAAATCGCAACGCGATTTT
34425 CAAAGCGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.26
Consensus pattern (41 bp):
ATCGCAACGCGATAATACAAAATCGCAACGCGATTTTGACT
Found at i:34592 original size:22 final size:22
Alignment explanation
Indices: 34566--34616 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
34556 CTACGGCAAC
*
34566 ATCCGTCCCCATCTCTGACGAA
1 ATCCGTCCCCATCTCCGACGAA
*
34588 ATCCGTCCCCATCTCCGGCGAA
1 ATCCGTCCCCATCTCCGACGAA
34610 ATCCGTC
1 ATCCGTC
34617 TATCTCCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.43, G:0.16, T:0.22
Consensus pattern (22 bp):
ATCCGTCCCCATCTCCGACGAA
Found at i:34713 original size:14 final size:15
Alignment explanation
Indices: 34694--34722 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
34684 CCACCGAGGG
34694 TTATTTTT-TTTTAA
1 TTATTTTTATTTTAA
34708 TTATTTTTATTTTAA
1 TTATTTTTATTTTAA
34723 AATTTTTGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTATTTTTATTTTAA
Found at i:35050 original size:19 final size:20
Alignment explanation
Indices: 35003--35129 Score: 81
Period size: 20 Copynumber: 6.7 Consensus size: 20
34993 GATAGTCAAA
*
35003 TTCGCGTTGCGATAGTCATT
1 TTCGCGTTGCGATTGTCATT
* *
35023 TTCGTGTTGCGATTTTCA-T
1 TTCGCGTTGCGATTGTCATT
35042 TTCGCGTTGCGA-T-T-A--
1 TTCGCGTTGCGATTGTCATT
* * **
35057 -TCTCGTTGCGATAGTCAAA
1 TTCGCGTTGCGATTGTCATT
*
35076 TTCGCGTT-CTGATAGTCATT
1 TTCGCGTTGC-GATTGTCATT
* *
35096 TTCGTGTTGCGATTTTCATT
1 TTCGCGTTGCGATTGTCATT
* *
35116 TTTGTGTTGCGATT
1 TTCGCGTTGCGATT
35130 TTAAGTTCCA
Statistics
Matches: 86, Mismatches: 13, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
14 10 0.12
16 2 0.02
17 2 0.02
18 1 0.01
19 13 0.15
20 57 0.66
21 1 0.01
ACGTcount: A:0.14, C:0.17, G:0.23, T:0.46
Consensus pattern (20 bp):
TTCGCGTTGCGATTGTCATT
Found at i:35095 original size:53 final size:54
Alignment explanation
Indices: 35007--35109 Score: 129
Period size: 53 Copynumber: 1.9 Consensus size: 54
34997 GTCAAATTCG
** * **
35007 CGTTGCGATAGTCATTTTCGTGTTGCGATTTTCA-TTTCGCGTTGCGATTATCT
1 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCATTTTCGCGTTGCGATTATCT
*
35060 CGTTGCGATAGTCAAATTCGCGTT-CTGATAGTCATTTTCGTGTTGCGATT
1 CGTTGCGATAGTCAAATTCGCGTTGC-GATAGTCATTTTCGCGTTGCGATT
35110 TTCATTTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
52 1 0.02
53 27 0.64
54 14 0.33
ACGTcount: A:0.16, C:0.18, G:0.23, T:0.43
Consensus pattern (54 bp):
CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCATTTTCGCGTTGCGATTATCT
Found at i:37269 original size:14 final size:14
Alignment explanation
Indices: 37250--37286 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
37240 GCTTGTTTAA
37250 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
37264 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
37278 TTGATTTGT
1 TTGATTTGT
37287 TTAATTGATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.49
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:37330 original size:36 final size:36
Alignment explanation
Indices: 37283--37394 Score: 125
Period size: 36 Copynumber: 3.4 Consensus size: 36
37273 AAAAGTTGAT
37283 TTGTTTAATTGATGTGTAAATAATTCTTATTTGTGC
1 TTGTTTAATTGATGTGTAAATAATTCTTATTTGTGC
* * *
37319 TTGTTTAATTGATTTGT-AA-AAGT-TGA----T--
1 TTGTTTAATTGATGTGTAAATAATTCTTATTTGTGC
37346 TTGTTTAATTGATGTGTAAATAATTCTTATTTGTGC
1 TTGTTTAATTGATGTGTAAATAATTCTTATTTGTGC
*
37382 TTATTTAATTGAT
1 TTGTTTAATTGAT
37395 TGAAATGTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
27 16 0.27
28 2 0.03
29 4 0.07
30 2 0.03
33 2 0.03
34 4 0.07
35 2 0.03
36 28 0.47
ACGTcount: A:0.27, C:0.04, G:0.16, T:0.54
Consensus pattern (36 bp):
TTGTTTAATTGATGTGTAAATAATTCTTATTTGTGC
Found at i:37363 original size:63 final size:63
Alignment explanation
Indices: 37264--37417 Score: 263
Period size: 63 Copynumber: 2.4 Consensus size: 63
37254 TTTGTAAAAG
*
37264 TTGATTTGTAAAAGTTGATTTGTTTAATTGATGTGTAAATAATTCTTATTTGTGCTTGTTTAA
1 TTGATTTGTAAAAGTTGATTTGTTTAATTGATGTGTAAATAATTCTTATTTGTGCTTATTTAA
37327 TTGATTTGTAAAAGTTGATTTGTTTAATTGATGTGTAAATAATTCTTATTTGTGCTTATTTAA
1 TTGATTTGTAAAAGTTGATTTGTTTAATTGATGTGTAAATAATTCTTATTTGTGCTTATTTAA
37390 TTGATTGAAATGTAAAAGTTGATTTGTT
1 TTGATT----TGTAAAAGTTGATTTGTT
37418 GATTTCAATC
Statistics
Matches: 86, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
63 68 0.79
67 18 0.21
ACGTcount: A:0.29, C:0.03, G:0.18, T:0.51
Consensus pattern (63 bp):
TTGATTTGTAAAAGTTGATTTGTTTAATTGATGTGTAAATAATTCTTATTTGTGCTTATTTAA
Found at i:37494 original size:20 final size:20
Alignment explanation
Indices: 37469--37537 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
37459 AGGTACACTT
*
37469 TCGCAACGCTAAACTCAAAA
1 TCGCAACGCAAAACTCAAAA
* * *
37489 TCGCAATGCGAAAGTCAAAA
1 TCGCAACGCAAAACTCAAAA
*
37509 TCGCAATGCAAAAGC-CAAAA
1 TCGCAACGCAAAA-CTCAAAA
37529 TCGCAACGC
1 TCGCAACGC
37538 GATATACGCT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.43, C:0.28, G:0.16, T:0.13
Consensus pattern (20 bp):
TCGCAACGCAAAACTCAAAA
Found at i:37624 original size:20 final size:20
Alignment explanation
Indices: 37560--37690 Score: 123
Period size: 20 Copynumber: 6.8 Consensus size: 20
37550 GCGATTTTCT
37560 CGTTGCGATAGTCAAATTC-
1 CGTTGCGATAGTCAAATTCG
* * *
37579 CTGTTACGATAATCAAATTCA
1 C-GTTGCGATAGTCAAATTCG
37600 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
* *
37620 CGTTGC-A-A-T---TTTTG
1 CGTTGCGATAGTCAAATTCG
*
37634 AGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
37654 CGTTGCGATAGTAAAATTCG
1 CGTTGCGATAGTCAAATTCG
* *
37674 CGTTGTGATATTCAAAT
1 CGTTGCGATAGTCAAAT
37691 GAATGTGTAA
Statistics
Matches: 89, Mismatches: 15, Indels: 15
0.75 0.13 0.13
Matches are distributed among these distances:
14 8 0.09
15 1 0.01
16 1 0.01
17 2 0.02
18 1 0.01
19 2 0.02
20 73 0.82
21 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCG
Found at i:37917 original size:140 final size:140
Alignment explanation
Indices: 37661--37943 Score: 485
Period size: 140 Copynumber: 2.0 Consensus size: 140
37651 TCGCGTTGCG
** *
37661 ATAGTAAAATTCGCGTTGTGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACATATCA
1 ATAGTAAAATTCGCGTTGCAATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
* * * *
37726 TAGTAATGTTCAAACTCAAGTTACTATTACATGTCTAACTGAAAATGTTAAAAGTTTACACATAA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATATTAAAAGTTTACACATAA
37791 AATACACATA
131 AATACACATA
*
37801 ATAGTCAAATTCGCGTTGCAATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
1 ATAGTAAAATTCGCGTTGCAATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
*
37866 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAATATATTAAAAGTTTACACATAA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATATTAAAAGTTTACACATAA
37931 AATACACATA
131 AATACACATA
37941 ATA
1 ATA
37944 CAACGTTTGC
Statistics
Matches: 134, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
140 134 1.00
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.30
Consensus pattern (140 bp):
ATAGTAAAATTCGCGTTGCAATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATATTAAAAGTTTACACATAA
AATACACATA
Found at i:38024 original size:18 final size:18
Alignment explanation
Indices: 38001--38035 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
37991 AAGCCGGTTG
*
38001 TGATTGGGATTTTGATTT
1 TGATTGCGATTTTGATTT
38019 TGATTGCGATTTTGATT
1 TGATTGCGATTTTGATT
38036 ACCTTTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.03, G:0.26, T:0.54
Consensus pattern (18 bp):
TGATTGCGATTTTGATTT
Found at i:40267 original size:24 final size:24
Alignment explanation
Indices: 40233--40286 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
40223 CTGAAACATC
40233 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
40257 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
40281 ATCAAA
1 ATCAAA
40287 TTTCTAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:41137 original size:20 final size:20
Alignment explanation
Indices: 41104--41172 Score: 84
Period size: 20 Copynumber: 3.5 Consensus size: 20
41094 TTGAAATTCA
* *
41104 GCGTTACGACAGTCAGAATC
1 GCGTTGCGATAGTCAGAATC
41124 GCGTTGCGATAGTCAGAATC
1 GCGTTGCGATAGTCAGAATC
** * *
41144 GCAATGCGATAGTCAAAATT
1 GCGTTGCGATAGTCAGAATC
41164 GCGTTGCGA
1 GCGTTGCGA
41173 ATCTGGAAAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (20 bp):
GCGTTGCGATAGTCAGAATC
Found at i:41742 original size:9 final size:11
Alignment explanation
Indices: 41717--41742 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
41707 TAGGACATAA
41717 TATATATTATT
1 TATATATTATT
41728 TATATATTATT
1 TATATATTATT
41739 TATA
1 TATA
41743 AATTTCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TATATATTATT
Found at i:43509 original size:185 final size:185
Alignment explanation
Indices: 43116--43508 Score: 639
Period size: 185 Copynumber: 2.1 Consensus size: 185
43106 ATAAAATTTT
* *
43116 AAATTTTAAATATATTATATATAACATATGGACTCATCCAAAACCATTTAAAACCCAATTAATAA
1 AAATATTAAATATATTATATATAACATATGGACTCAGCCAAAACCATTTAAAACCCAATTAATAA
*
43181 TTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATTTATATAAATTTT
66 TTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAATTTT
*
43246 TATTTTATAATTATATATTATTTAAATTAATTGTAAACAGTTTTTCTGAATTAAA
131 TATTTTATAATTATATATTATTTAAATTAATTATAAACAGTTTTTCTGAATTAAA
*
43301 AAATATTAAATATATTATATATAACATAT-GAGCTCAGCCCAAACCATTTAAAACCCAATTAATA
1 AAATATTAAATATATTATATATAACATATGGA-CTCAGCCAAAACCATTTAAAACCCAATTAATA
43365 ATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAATTT
65 ATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAA--T
* *
43430 TTTTATTTTATAATTATATATTATTTAAATTAATTATAATCTA-TTTTTTTGAATTAAAA
128 TTTTATTTTATAATTATATATTATTTAAATTAATTATAAAC-AGTTTTTCTGAATT-AAA
* *
43489 AAATATTTAAT-TTTTATATA
1 AAATATTAAATATATTATATA
43509 AATTAGAAAA
Statistics
Matches: 194, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
184 2 0.01
185 119 0.61
187 59 0.30
188 14 0.07
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.42
Consensus pattern (185 bp):
AAATATTAAATATATTATATATAACATATGGACTCAGCCAAAACCATTTAAAACCCAATTAATAA
TTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAATTTT
TATTTTATAATTATATATTATTTAAATTAATTATAAACAGTTTTTCTGAATTAAA
Found at i:46029 original size:58 final size:59
Alignment explanation
Indices: 45885--46030 Score: 147
Period size: 58 Copynumber: 2.5 Consensus size: 59
45875 AGTTTGGGGG
* *
45885 ATAAAATTGAAATATTCAAAAGTTTGAGGACCAATTTAAAAAAAGAGTCATAGTTTAGGA
1 ATAAAATTGAAATATTCAAAAGTTTAAGGACCAATTT-AAAAAAGAGTCATAATTTAGGA
* * * * * *
45945 CT-GAATTTAGAATGA-TCAAAAGTTTAAGGACTAGTTT-AAAAGGAGTCATAATTT-GGAA
1 ATAAAATTGA-AAT-ATTCAAAAGTTTAAGGACCAATTTAAAAAAGAGTCATAATTTAGG-A
*
46003 ATAAAATTGAAATATTCAAAAATTTAAG
1 ATAAAATTGAAATATTCAAAAGTTTAAG
46031 TGTCAATTTA
Statistics
Matches: 69, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
57 3 0.04
58 32 0.46
59 10 0.14
60 23 0.33
61 1 0.01
ACGTcount: A:0.47, C:0.06, G:0.16, T:0.30
Consensus pattern (59 bp):
ATAAAATTGAAATATTCAAAAGTTTAAGGACCAATTTAAAAAAGAGTCATAATTTAGGA
Done.